Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2423 ATGATCATGACGGTCACTGCTAGAGTAATCGCAACAGCTCGATCATTGGTTCCATCGAGCCAGTTCCCTCTTCTACGTCCCTCTTCTTATGTATTCGCTGCCCACAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTACGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTAAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGCAAAAGGGAGACTGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTTTGGGTGAGACAAACTATGGAGCCAGCTTTATTGAGTTCTTTTCCGAAGAAGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCTGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTCGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAATATTTGACGATGCAGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTGGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTCCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCGAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTAGTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAACGACACTAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTCGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGTGTTAAACAGTCAGGCCTTGGAAGGGAGGGGTCGAAATATGGGATGGACGAGTATCTTGAGTTGAAATATGTTTGCTTGGGGAATATGGACCGCCAATGA 1626 45.2 MIMTVTARVIATARSLVPSSQFPLLRPSSYVFAAHKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTIKVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEEIGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGVITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLVPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRQ 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8496559 8530228 - PI0010032.1 Cmetu11g2423 371155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2423 541 FunFam Aldehyde dehydrogenase, putative 505 531 - -
Cmetu11g2423 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Cmetu11g2423 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Cmetu11g2423 541 FunFam Succinate-semialdehyde dehydrogenase I 80 322 - -
Cmetu11g2423 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491
Cmetu11g2423 541 NCBIfam succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013|GO:0009450
Cmetu11g2423 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Cmetu11g2423 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 60 538 - -
Cmetu11g2423 541 FunFam Succinate-semialdehyde dehydrogenase I 313 502 - -
Cmetu11g2423 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Cmetu11g2423 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Cmetu11g2423 541 SUPERFAMILY ALDH-like 61 539 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2423 K17761 - - csv:101217352 1019.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2139 Cmetu-Chr1:28470806 Cmetu11g2423 Cmetu-Chr11:8496559 6.70E-55 dispersed
Cmetu05g1877 Cmetu-Chr5:2268849 Cmetu11g2423 Cmetu-Chr11:8496559 2.20E-88 dispersed
Cmetu08g0424 Cmetu-Chr8:20809568 Cmetu11g2423 Cmetu-Chr11:8496559 3.00E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1987 . 7 454 Aldehyde Dehydrogenase Gene Family AT3G24503 71.5 5.0e-188 654.4
Cmetu05g1877 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 6.4e-159 557.8
Cmetu02g1050 . 46 551 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 4.3e-155 545.0
Cmetu02g1050 . 4 551 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 6.3e-253 870.2
Cmetu05g1877 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 6.7e-247 850.1
Cmetu02g1987 . 23 454 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 9.3e-140 494.2
Cmetu05g1877 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 75.8 5.6e-169 590.9
Cmetu02g1050 . 4 395 Aldehyde Dehydrogenase Gene Family AT1G23800 72.7 4.4e-166 581.3
Cmetu02g1987 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 2.9e-101 365.9
Cmetu07g0284 . 3 486 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 1.9e-180 629.4
Cmetu07g0245 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.6e-176 616.3
Cmetu07g0284 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 73.0 1.9e-180 629.0
Cmetu07g0245 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 5.4e-175 610.9
Cmetu05g0548 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 5.1e-117 418.3
Cmetu07g0297 . 1 462 Aldehyde Dehydrogenase Gene Family AT4G36250 58.5 3.1e-166 582.0
Cmetu05g0548 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.7 4.4e-157 551.6
Cmetu11g2423 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 77.0 4.9e-234 807.4
Cmetu01g1175 . 23 483 Aldehyde Dehydrogenase Gene Family AT2G14170 82.6 6.1e-225 777.3
Cmetu08g0424 . 218 643 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.3e-171 599.4
Cmetu02g0096 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cmetu02g0096 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 80.9 3.1e-254 874.4
Cmetu05g0490 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 90.4 1.5e-269 925.2
Cmetu12g1329 . 21 548 Aldehyde Dehydrogenase Gene Family AT5G62530 77.1 2.6e-254 874.8
Cmetu11g1721 . 41 627 Aldehyde Dehydrogenase Gene Family AT3G66658 76.3 1.3e-275 945.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42