Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2447 ATGCCACAAAAGGGAATGAGGACTGTGTTCTTCAATTCTCCAATTTCTTCTGTACCGAGCACGCCGTCGTCGTCCTCGTCCCACTCGTCTCGCCCCACTTTATCGGATTCAATGGTGGAAGAGAATCTTGAAGTTGCAGAATCGTTTGTGATGAGGTGGAGACCTGATTCCATCATTGTTGGTTCTTTGTTTCAAGGAGATGACCGTGATGAAGCTCGGAAGTATATCAAAGCCGTTAAGGATTTGTATAATTCCATGCACTGCCTTGCTTCTCGGGATTCATCTTCCCAGAAGCTTATGCGTGCTCATGATTTGATGAAGATAGCTATGGAGAGGCTACAGAAAGAGTTTTATCAGATTTTGTCAGTTAATCGAGAATATTTGTATCCGGAATCGGTTTCTGGCGTCCAATCGCCGATGACGATATCGGCCAGATCGAGTGTTTCTGATTTTGAATTGGAATCGGAAGATGAATTCCGATTTGCTAATGAATCTATTGCGGAGGTTGAGCGAGTTTCTATGTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACGGGCTATGGTAAAGAATGTGTGAAGGTTTATAAAATTGTGAGGAAGTCGATAATTGATGAGAGTATCTATAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAATTCAGAAGATGGATTGGGAGGTTCTGGAAATCAAAATCAAAATCTGGTTGAAAGGTGTGAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAAAATCCTTTGCGATCATGTGTTCTCAGGTTCCGTTCCAATCAGAGAATCGTGCTTCGCTCAAATTTCCAAAGACGGAGCAGCAATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAGAAAACTCCAGAGAAAATTTTCATTACGCTAGATCTATACGAAGCTATAGCCGATCTCTGGCCGGAGATTGATTACATTTTCTCATCCACAGCAACATCAATGGTACAGTCACAAGCCGTCACCTCACTAATCAAACTCGGAGAGAACATTCGAACATTAATCTCCGAATTCGAAATGGCTATTCAGAAAGAATCATCGAAAACGCCTGTTCCTAGAGGCGGAGTTCATCCACTCACTCGCTACGTGATGAACTATATCTCATTCCTCTCCGATTACAGTGGAATACTAAACGACATTGTAGCCGATTGGCCTTTAGCAACAAAATTATCAATGCCAGAATCATATTACGGAACACCTAAACAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGTTGATTCTCGTCCTCCTTTGCAAACTCGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCCTACTTGTTCTTAGCGAACAATCTCCAGTACGTCGTTGAAAAAGTCCGTACCTCGAATCTGAGATTCATCCTCGGCAGCGACTGGGTTGAGAGACACGAATCAAAGGTCAAACTGTACTCCTCCAAGTATAGACGCATTGGATGGAGTGGAGTTTTCTCGTCGCTACCGACTGATGTCACGGCGGAAATATCGCCGGAGGAAGCAAGAGAATCGTTCAGAAATTTCAATAGATCTTTTGAAGAAACTTACAGAAAACAAACCTCATGGATCGTCCCCGATCAGAAGCTTCGCGATGAAATAAAGATCTTATTAGCGAGGGAAATTGGAGCTTTATATGGCGAGTTTTACAAGAGGAATCGGGTTCGGGTTAGGCGGGTTTCTGGATCGGATCATGTGGTCCGATTATCACCTGATGATTTGGGTAACTATTTATCGGATCTATTTTACGGGCATGGATCCGAAAGTGTTGGGAGCGGGTCCTCGAGTAATTCATCGTCCCATTCCTCGCCGTCTTCTCGAGGGAGATTAGGTCGTTGA 1887 43.4 MPQKGMRTVFFNSPISSVPSTPSSSSSHSSRPTLSDSMVEENLEVAESFVMRWRPDSIIVGSLFQGDDRDEARKYIKAVKDLYNSMHCLASRDSSSQKLMRAHDLMKIAMERLQKEFYQILSVNREYLYPESVSGVQSPMTISARSSVSDFELESEDEFRFANESIAEVERVSMSAMADLKAIADCMISTGYGKECVKVYKIVRKSIIDESIYNLGIEKLSFSKIQKMDWEVLEIKIKIWLKGVKTAVKSLFEGEKILCDHVFSGSVPIRESCFAQISKDGAAILFGFPELVAKYKKTPEKIFITLDLYEAIADLWPEIDYIFSSTATSMVQSQAVTSLIKLGENIRTLISEFEMAIQKESSKTPVPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWPLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLQYVVEKVRTSNLRFILGSDWVERHESKVKLYSSKYRRIGWSGVFSSLPTDVTAEISPEEARESFRNFNRSFEETYRKQTSWIVPDQKLRDEIKILLAREIGALYGEFYKRNRVRVRRVSGSDHVVRLSPDDLGNYLSDLFYGHGSESVGSGSSSNSSSHSSPSSRGRLGR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6386258 6388227 - PI0017774.1 Cmetu11g2447 371179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2447 628 MobiDBLite consensus disorder prediction 1 37 - -
Cmetu11g2447 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 35 599 IPR004140 GO:0000145|GO:0006887
Cmetu11g2447 628 Pfam Exo70 exocyst complex subunit 240 596 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmetu11g2447 628 SUPERFAMILY Cullin repeat-like 63 598 IPR016159 -
Cmetu11g2447 628 FunFam Exocyst subunit Exo70 family protein 60 606 - -
Cmetu11g2447 628 MobiDBLite consensus disorder prediction 9 37 - -
Cmetu11g2447 628 MobiDBLite consensus disorder prediction 604 628 - -
Cmetu11g2447 628 Gene3D Exocyst complex component Exo70 60 606 - -
Cmetu11g2447 628 MobiDBLite consensus disorder prediction 603 628 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2447 K07195 - - csv:101212978 1088.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1827 Cmetu-Chr10:16320553 Cmetu11g2447 Cmetu-Chr11:6386258 1.30E-142 dispersed
Cmetu11g2447 Cmetu-Chr11:6386258 Cmetu12g0712 Cmetu-Chr12:23017033 1.90E-176 dispersed
Cmetu11g2447 Cmetu-Chr11:6386258 Cmetu08g0872 Cmetu-Chr8:22041312 5.50E-176 wgd
Cmetu11g2447 Cmetu-Chr11:6386258 Cmetu08g1383 Cmetu-Chr8:16366735 9.30E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0057 . 12 634 EXO70 exocyst subunit family AT5G03540 73.6 5.9e-269 923.7
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G03540 71.4 1.5e-267 919.1
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G52340 80.1 2.0e-298 1021.5
Cmetu10g0057 . 14 634 EXO70 exocyst subunit family AT5G52340 71.1 1.0e-254 876.3
Cmetu08g1948 . 145 631 EXO70 exocyst subunit family AT5G52350 63.1 2.2e-174 609.4
Cmetu10g0057 . 134 634 EXO70 exocyst subunit family AT5G52350 60.4 5.2e-168 588.2
Cmetu12g0418 . 1 630 EXO70 exocyst subunit family AT5G58430 66.6 2.3e-246 848.6
Cmetu12g0418 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.2e-174 609.4
Cmetu07g1382 . 77 676 EXO70 exocyst subunit family AT5G13150 54.4 1.9e-174 609.8
Cmetu09g0691 . 92 703 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-191 664.8
Cmetu04g0927 . 9 597 EXO70 exocyst subunit family AT1G72470 63.9 2.6e-205 712.2
Cmetu04g0927 . 9 595 EXO70 exocyst subunit family AT1G54090 61.3 1.1e-200 696.8
Cmetu04g0927 . 9 596 EXO70 exocyst subunit family AT3G14090 62.8 2.9e-209 725.3
Cmetu02g0875 . 13 651 EXO70 exocyst subunit family AT5G50380 62.7 2.8e-229 792.0
Cmetu12g0357 . 25 663 EXO70 exocyst subunit family AT5G50380 62.6 8.9e-228 786.9
Cmetu03g1613 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 7.1e-294 1006.5
Cmetu10g1827 . 43 586 EXO70 exocyst subunit family AT3G55150 51.5 9.6e-152 534.3
Cmetu11g2447 . 35 600 EXO70 exocyst subunit family AT3G55150 50.1 1.2e-149 527.3
Cmetu10g1827 . 12 586 EXO70 exocyst subunit family AT2G39380 52.0 2.9e-156 549.3
Cmetu08g0872 . 27 632 EXO70 exocyst subunit family AT3G09520 54.6 4.5e-178 621.7
Cmetu11g2447 . 33 610 EXO70 exocyst subunit family AT5G59730 50.2 5.1e-153 538.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68