Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2454 ATGCCGCTTCCTCCCAAACTGAGCCGACCACTGCACAGGGACTCGGACGTTCCGGAGATGCCTTCCAACAGCTTGTGGGTTGGCAATTTATCCATGGAGGTCACCGATGGGGATCTCATGAATTTGTTTGCACAGTTTGGTGGGATTGATAGTGTTACTTCCTATCCCTCCAGGAGCTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCCCAAGCTGCCAAGGAGGCTCTTCAGGGTTTTTTTCTGCGTGGGAATTCTATCAAAATCGAGTTTGCCAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGAAATACTGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATGATGAATGGGAAACGCATTGGTGGAGAGCAGCTACGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCAGACACCAGAGATGGGCATGGACAGCTTCAGGCTAGAAATATGGGGATGGGGGATTTCCAATCTGGTTATAAAAGACCACTGCATGCTCAATCTTCAGAAGTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGAGAGAATCACAAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGAGCTAAGGAGGGTCTACAAGGGCGACTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGGACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGGCTAGGCCTGATATGTTCTTCAATGAGCATCAAATTCGTCCTCCACCAATGGACCTGTTGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGTATTCTTGGACCAAATACAGGAGTAAGACCACCACCCTTTGGTCCTCCACCGGGTATCTCAGGGCCCCCTGAGTTTAATGACTTGGCCACATCTCATAGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCAGCACCTGGGATACTTTCTTCTCCAGCCACTGGTATTCGTCCACCTCCACCATTGAGGTCCACTCCAAATTCATGGGATGTTTTGGATGTAAATCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCACCATCCTTGGATGATGTTTCTTTTCCTCCAAGAAAAATGGATAACCGGAGCATGGGTTTTGATCAGCAATATGGGATTGGTCCTATAAGCGATGGAGGTTCTTCTGTTCCATATGCCAATGCTCCAGCAAAGACTCCTGCTATTCCTATAGGTGCAAGGGCCCCAGTTAGTGGTCCTTGCCAGAGCCATGCTGAAAATGATTTTATATGGCGTGGAATAATTGCCAAGGGAGGAACGCCTGTTTGCCATGCTCGTTGTGTCCCAATTGGGGAAGGAATCGGAAGTGAGCTTCCCGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAACTCACTAAACATTATGCTGAAGCAACCGGATTCGACATTGTCTTTTTCTTGCCTGATAGTGAGGATGATTTTGCATCCTATACCGAATTCCTGCGTTACCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTAGTTCCTCCTTCAGAGTTTCTGAGAAAAGTTTTGAAAGTTTCTGGTCCCGAGCGGCTTTATGGTCTTGTTCTCAAATTTCCTCAGGTGTCTGTTAGCGAACCTGCTCCCCAACAGTCATATCTACCTGTTCCTACATCTGACTATGGTGAGAGACAGCATGTTTTACCTTCACAAACAGAATATGGGTCAGTGCCTTCAAAGCAGGAGCAACTTCCTCCAATGGATTATAATAGGGTTTTGCATGACGAAACCAAGGAGCCCCCAAAACTTCTGCCCACAAGTGAGCCACAACCACTAGCAGTTCAGCCCTTGCCTCAAGAGTATTCTGGTAACAATAATACGGCTACGATTTCGCAAGCTGGGTTAGCATTAACACCTGAGCTCATTGCCACCTTGGTTTCTTTACTACCTGGTAAGACACAGTCATCCAGTTTAGAGAGTGTCAAACAACCAGCAGTCTCACCACAACCTCCGGTTCCGATTCCTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGCCATCAATCTTCTGAACTAAACGGTCAGCCATTTCAGCAGATGGGAAATCATTTTAATCCTCAGGGACAGAGCCTTTCTCAATTTCAGCCTTATCCACCTCTCCCCCAGACGCCTAACCAGCATGCACCACAGGCCATTGGAACAAGCCAAATCCAAGATGCTGCTGTCAGTCTGCCACAGCAGCAGCAGGTACCTATTCCTTACAGGCCTTTGTCTACTTATTCTGCCCCTCCTGAAAATGCACAAGCTTCTGGTTTGGCCTTAGTCAATCCTCAGTATCAGCATGATGTCTCGCAAATGAGCCAGAGAGGTTATGGGCCAGTCAATGGAGTTGATACTTCTGGGTATGGTCCACCAGTTATGCAGCAATCAACAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTACAACACAGTCACAATCTATAACTCAATTAGCATCTGATAGAGTGAACCCTGAGCTTCCTTATCAGATGCAGCATTTACAATCTGCAAACCTTGGCACTGGCACTGGCACTGGCACTGGGACCAGTGATGTTGAGGCAGGCAAGGACCAGAGATATCGATCTACACTCCAATTTGCTGCCAATTTACTCCTCCAGATTCAGCAGCAACAGCAGCAACAGCAGCAGCAAGCAGGCTGGGGTTCAGGAAATCAATAG 3042 45.92 MPLPPKLSRPLHRDSDVPEMPSNSLWVGNLSMEVTDGDLMNLFAQFGGIDSVTSYPSRSYAFIFFKHMEDAQAAKEALQGFFLRGNSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFVEYVRLEDASQALRMMNGKRIGGEQLRVDFLRSQPMRRDQWPDTRDGHGQLQARNMGMGDFQSGYKRPLHAQSSEVRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPGPVKEHPGFYPGGKEARPDMFFNEHQIRPPPMDLLGHPHPMVQNKFPGPLPSSGILGPNTGVRPPPFGPPPGISGPPEFNDLATSHSFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPLRSTPNSWDVLDVNQFQRDSKRSRIDGPPSLDDVSFPPRKMDNRSMGFDQQYGIGPISDGGSSVPYANAPAKTPAIPIGARAPVSGPCQSHAENDFIWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSVSEPAPQQSYLPVPTSDYGERQHVLPSQTEYGSVPSKQEQLPPMDYNRVLHDETKEPPKLLPTSEPQPLAVQPLPQEYSGNNNTATISQAGLALTPELIATLVSLLPGKTQSSSLESVKQPAVSPQPPVPIPPVVSNKGATSEGWMVGHQSSELNGQPFQQMGNHFNPQGQSLSQFQPYPPLPQTPNQHAPQAIGTSQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENAQASGLALVNPQYQHDVSQMSQRGYGPVNGVDTSGYGPPVMQQSTNTVTLSNQGQGSTTQSQSITQLASDRVNPELPYQMQHLQSANLGTGTGTGTGTSDVEAGKDQRYRSTLQFAANLLLQIQQQQQQQQQQAGWGSGNQ 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 720393 733965 - PI0027098.1 Cmetu11g2454 371186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2454 1013 SUPERFAMILY RNA-binding domain, RBD 97 194 IPR035979 GO:0003676
Cmetu11g2454 1013 CDD RRM_SF 25 91 - -
Cmetu11g2454 1013 FunFam Flowering time control protein FPA 15 97 - -
Cmetu11g2454 1013 Pfam SPOC domain 512 631 IPR012921 -
Cmetu11g2454 1013 Gene3D - 12 96 IPR012677 -
Cmetu11g2454 1013 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Cmetu11g2454 1013 CDD SPOC_FPA-like 519 639 - -
Cmetu11g2454 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Cmetu11g2454 1013 PANTHER RNA RECOGNITION MOTIF-CONTAINING 19 95 - -
Cmetu11g2454 1013 SMART rrm1_1 101 168 IPR000504 GO:0003723
Cmetu11g2454 1013 SMART rrm1_1 224 292 IPR000504 GO:0003723
Cmetu11g2454 1013 SMART rrm1_1 24 91 IPR000504 GO:0003723
Cmetu11g2454 1013 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Cmetu11g2454 1013 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 166 IPR000504 GO:0003723
Cmetu11g2454 1013 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 89 IPR000504 GO:0003723
Cmetu11g2454 1013 SUPERFAMILY RNA-binding domain, RBD 218 302 IPR035979 GO:0003676
Cmetu11g2454 1013 MobiDBLite consensus disorder prediction 393 461 - -
Cmetu11g2454 1013 MobiDBLite consensus disorder prediction 913 938 - -
Cmetu11g2454 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723
Cmetu11g2454 1013 CDD RRM_SF 102 168 - -
Cmetu11g2454 1013 Gene3D - 209 300 IPR012677 -
Cmetu11g2454 1013 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Cmetu11g2454 1013 CDD RRM_SF 230 292 - -
Cmetu11g2454 1013 Gene3D - 97 208 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2454 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu11g0388 Cmetu-Chr11:18212270 Cmetu11g2454 Cmetu-Chr11:720393 2.20E-69 dispersed
Cmetu11g2454 Cmetu-Chr11:720393 Cmetu12g2057 Cmetu-Chr12:7889120 3.10E-11 dispersed
Cmetu11g2454 Cmetu-Chr11:720393 Cmetu12g0498 Cmetu-Chr12:8030956 1.60E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41