Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2533 ATGGAGGAGGATAACAATGGCGGCTTCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTATTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGCTGCCAGATGATACGGTTAAAGCTCTTGCTTCGTTGAAAGAAGCTCTGGAATCGACTAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGAAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAACTCTTGACATATCTGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCTAGAGAAAGGAATGATACGCAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACTGATCCTTCTGTCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCAATACTATTGAAAAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTGTTTCTTCAAAAGAACAGAGTCATTCTCGCACTGGTGGACAAGCGTCTTCTGGTAAGAAAGATACATCGTCCCTTCACATACCTGAAGACTTTCGATGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCTACTGGACAGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTGCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGTCAATGGGATTGAACCACCACAACGTTCCAGCAGTTCTCAGCCAAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATCCCTCTTCTTGTTGATCTTCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCTGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTTCTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTATTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCCAGCAATTCCGAAGGACGAGCTGCAATTGGAGCAGCCGAATCTGTCCCTATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTCGAAGCAAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGAAAGGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTACTACCACCACCCTCCGCAATCGGCAACGTTGAAAGCTGA 1977 44.31 MEEDNNGGFFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDTVKALASLKEALESTKELLRHGSEGSKIYLALEREKILNQFHEVTARLEQALNEISHETLDISDEVKEQVDLVLSQFKRARERNDTQDAELYVNLNSLYNNRDVATDPSVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGVSSKEQSHSRTGGQASSGKKDTSSLHIPEDFRCPISLDLMKDPVIVSTGQTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSSSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDMAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQSQPLLPPPSAIGNVES 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6553838 6558608 - PI0001765.1 Cmetu11g2533 371265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2533 658 Gene3D - 337 492 IPR011989 -
Cmetu11g2533 658 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cmetu11g2533 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 430 IPR000225 GO:0005515
Cmetu11g2533 658 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Cmetu11g2533 658 SUPERFAMILY RING/U-box 250 332 - -
Cmetu11g2533 658 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cmetu11g2533 658 MobiDBLite consensus disorder prediction 633 658 - -
Cmetu11g2533 658 FunFam RING-type E3 ubiquitin transferase 335 631 - -
Cmetu11g2533 658 MobiDBLite consensus disorder prediction 230 257 - -
Cmetu11g2533 658 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cmetu11g2533 658 Gene3D - 10 120 IPR036537 GO:0007166
Cmetu11g2533 658 Pfam Armadillo/beta-catenin-like repeat 545 584 IPR000225 GO:0005515
Cmetu11g2533 658 Pfam Armadillo/beta-catenin-like repeat 382 420 IPR000225 GO:0005515
Cmetu11g2533 658 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
Cmetu11g2533 658 Coils Coil 95 115 - -
Cmetu11g2533 658 SMART arm_5 504 544 IPR000225 GO:0005515
Cmetu11g2533 658 SMART arm_5 463 503 IPR000225 GO:0005515
Cmetu11g2533 658 SMART arm_5 422 462 IPR000225 GO:0005515
Cmetu11g2533 658 SMART arm_5 545 585 IPR000225 GO:0005515
Cmetu11g2533 658 SMART arm_5 381 421 IPR000225 GO:0005515
Cmetu11g2533 658 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cmetu11g2533 658 MobiDBLite consensus disorder prediction 230 253 - -
Cmetu11g2533 658 MobiDBLite consensus disorder prediction 633 649 - -
Cmetu11g2533 658 Gene3D - 493 635 IPR011989 -
Cmetu11g2533 658 SUPERFAMILY ARM repeat 353 625 IPR016024 -
Cmetu11g2533 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cmetu11g2533 658 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cmetu11g2533 658 CDD MLKL_NTD 31 139 - -
Cmetu11g2533 658 PANTHER U BOX DOMAIN-CONTAINING 31 624 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2533 K27628 - - csv:101221150 1196.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1519 Cmetu-Chr5:14061012 Cmetu11g2533 Cmetu-Chr11:6553838 2.90E-30 dispersed
Cmetu07g1864 Cmetu-Chr7:4589170 Cmetu11g2533 Cmetu-Chr11:6553838 1.60E-28 dispersed
Cmetu08g0665 Cmetu-Chr8:19990077 Cmetu11g2533 Cmetu-Chr11:6553838 2.80E-19 dispersed
Cmetu10g1534 Cmetu-Chr10:8486681 Cmetu11g2533 Cmetu-Chr11:6553838 8.20E-61 dispersed
Cmetu11g2343 Cmetu-Chr11:17065890 Cmetu11g2533 Cmetu-Chr11:6553838 3.80E-65 dispersed
Cmetu11g2533 Cmetu-Chr11:6553838 Cmetu12g0678 Cmetu-Chr12:5805784 1.10E-49 dispersed
Cmetu04g0540 Cmetu-Chr4:3083257 Cmetu11g2533 Cmetu-Chr11:6553838 2.00E-15 transposed
Cmetu10g1622 Cmetu-Chr10:21513512 Cmetu11g2533 Cmetu-Chr11:6553838 4.40E-125 transposed
Cmetu11g2533 Cmetu-Chr11:6553838 Cmetu12g1883 Cmetu-Chr12:23520530 2.20E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25