Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu11g2597 ATGGCTCAGCCTTCAAACGGTGCCGATCTCAATCCCCAGGCTCCTCATCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCACCAACAGCAGATGATGATGTATCCTCCTCAGCATTATATGGCGTATTCTCACCATCCTTATCAACAGCAACAACAGCAACAGCAGCAGCCGTCGTCGCAGCAGCAGCAACAGCATGCTCAGTCGCAGAGACCTCGTAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTCCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCGGAGGGCTATGGTTTTGTTGAGTTCTTCTCACATACAACAGCCGAAAAAGTATTGCAGAATTATAATGGTACTATAATGCCTAATACAGAGCTGCCTTTCCGTCTCAATTGGGCAACCTTTAGTGCAAATGATAGGCGACCGGACACTGGTTCTGACCTATCAATATTTGTTGGTGACTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCCAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTCGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTACGCTTCACAAGCTTTGGTACTGGCCGGTGGACATCCCAATGGCATGGCTGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACGATATTTGTTGGTGGCCTCGATTCTGATGTTAGTGATGAAGATCTCAAGCAAGCTTTCTCTAAATTTGGTGACGTTGTCTCTGTGAAAATTCCAATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTGTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGCACCACAGCATCAGGACCCAAACATGCATGCCACAGCTGCTGCTGCAGCTGCAGTTAATGCTTCATCTTGA 1317 46.32 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSAPQHQDPNMHATAAAAAAVNASS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26720115 26736853 + PI0028479.1 Cmetu11g2597 371329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu11g2597 438 Gene3D - 293 419 IPR012677 -
Cmetu11g2597 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 383 IPR000504 GO:0003723
Cmetu11g2597 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 387 - -
Cmetu11g2597 438 FunFam Polyadenylate-binding protein RBP47B 99 179 - -
Cmetu11g2597 438 Gene3D - 192 269 IPR012677 -
Cmetu11g2597 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Cmetu11g2597 438 SUPERFAMILY RNA-binding domain, RBD 302 413 IPR035979 GO:0003676
Cmetu11g2597 438 CDD RRM1_SECp43_like 101 181 - -
Cmetu11g2597 438 CDD RRM2_SECp43_like 192 271 - -
Cmetu11g2597 438 Gene3D - 56 191 IPR012677 -
Cmetu11g2597 438 MobiDBLite consensus disorder prediction 64 98 - -
Cmetu11g2597 438 SMART rrm1_1 312 379 IPR000504 GO:0003723
Cmetu11g2597 438 SMART rrm1_1 101 174 IPR000504 GO:0003723
Cmetu11g2597 438 SMART rrm1_1 194 268 IPR000504 GO:0003723
Cmetu11g2597 438 SUPERFAMILY RNA-binding domain, RBD 64 184 IPR035979 GO:0003676
Cmetu11g2597 438 SUPERFAMILY RNA-binding domain, RBD 176 285 IPR035979 GO:0003676
Cmetu11g2597 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Cmetu11g2597 438 MobiDBLite consensus disorder prediction 64 90 - -
Cmetu11g2597 438 FunFam Polyadenylate-binding protein RBP47 293 414 - -
Cmetu11g2597 438 FunFam Polyadenylate-binding protein RBP47B 181 283 - -
Cmetu11g2597 438 MobiDBLite consensus disorder prediction 1 25 - -
Cmetu11g2597 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Cmetu11g2597 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Cmetu11g2597 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu11g2597 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1810 Cmetu-Chr3:1526883 Cmetu11g2597 Cmetu-Chr11:26720115 1.40E-122 dispersed
Cmetu05g1832 Cmetu-Chr5:4474276 Cmetu11g2597 Cmetu-Chr11:26720115 1.60E-08 dispersed
Cmetu07g1732 Cmetu-Chr7:22326174 Cmetu11g2597 Cmetu-Chr11:26720115 9.00E-122 dispersed
Cmetu08g1875 Cmetu-Chr8:18718298 Cmetu11g2597 Cmetu-Chr11:26720115 9.10E-10 dispersed
Cmetu11g2597 Cmetu-Chr11:26720115 Cmetu12g2073 Cmetu-Chr12:4005458 2.00E-103 dispersed
Cmetu05g0555 Cmetu-Chr5:1041917 Cmetu11g2597 Cmetu-Chr11:26720115 4.60E-07 transposed
Cmetu07g1053 Cmetu-Chr7:5107995 Cmetu11g2597 Cmetu-Chr11:26720115 4.50E-08 transposed
Cmetu11g1392 Cmetu-Chr11:3621856 Cmetu11g2597 Cmetu-Chr11:26720115 1.30E-10 transposed
Cmetu01g2628 Cmetu-Chr1:565687 Cmetu11g2597 Cmetu-Chr11:26720115 1.10E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117