Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0038 ATGGGAGAGGAGGTGAAGATGGCGGAATATGAAAGCGGTGATGGTGGTGGTGAAGATGAAAGCTGTGCTCATGAGGAACGAGTATTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCACCGGAGCTTGCATCTGCATTCAGTATATCAACCGGACCATGTCGGACACTCATGGATGTTAATCGAGCGTCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCATCGAATAATTTCAAGTCCTTTAACGATGATCGAACTCAGGATCATGATCCGATGGTGGTTGAAGGAGATGAGGCAACGGAGAGAGATGCAGGGTCGGATTCTAGGAAATTAAGGAAAGTTGATTGTGCAGAAGAGGCTGATTCGGCTCTTCGGACGGATAATTCTATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGACTTGTATGGACGCCACAATTACATAAGCGATTTGTGGACGTTGTTGCTCATCTTGGGATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAACGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGGTCTTCCAACGAGGGGCCGTCGTCGCCGGACCGGATTTTTGCCTCCACGCCTGTACCGCAGACCTTGCACGAGTCAACCAACAGTGGGCAAGCAAATGGAAATGGGCATTTGCCAGTTCCGACTCCGATGCCGTATGGACCACCTATGATGCCGATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCTCATAGTTATATGGGTATGCCTGTAGCTCATCCGGGAAGCGCACAGGGATACCCTGGCTTTGAAACGCATCCGTTCAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACAGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAATACTAATGATAAGTGA 1008 48.91 MGEEVKMAEYESGDGGGEDESCAHEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRTQDHDPMVVEGDEATERDAGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGQANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPVAHPGSAQGYPGFETHPFNMMHQRDWSGNKYSSIVPYPHPHVPPNTNDK 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23792238 23796661 + PI0025193.1 Cmetu12g0038 371374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0038 335 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 315 IPR044841 GO:0003700|GO:0006355
Cmetu12g0038 335 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu12g0038 335 Gene3D - 153 215 - -
Cmetu12g0038 335 MobiDBLite consensus disorder prediction 95 124 - -
Cmetu12g0038 335 Pfam Myb-like DNA-binding domain 160 208 IPR001005 -
Cmetu12g0038 335 MobiDBLite consensus disorder prediction 98 124 - -
Cmetu12g0038 335 SUPERFAMILY Homeodomain-like 153 213 IPR009057 -
Cmetu12g0038 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 157 209 IPR006447 GO:0003677
Cmetu12g0038 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 212 IPR017930 -
Cmetu12g0038 335 FunFam Two-component response regulator 152 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2442 Cmetu-Chr4:7337949 Cmetu12g0038 Cmetu-Chr12:23792238 1.60E-37 dispersed
Cmetu08g1522 Cmetu-Chr8:6644500 Cmetu12g0038 Cmetu-Chr12:23792238 2.90E-37 dispersed
Cmetu11g1360 Cmetu-Chr11:3939795 Cmetu12g0038 Cmetu-Chr12:23792238 5.30E-20 dispersed
Cmetu11g1909 Cmetu-Chr11:26810430 Cmetu12g0038 Cmetu-Chr12:23792238 1.20E-08 dispersed
Cmetu11g1564 Cmetu-Chr11:6791343 Cmetu12g0038 Cmetu-Chr12:23792238 2.40E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8863 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Cmetu TF