Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0052 ATGGCTTTCTGGCCCTTCTTCTTCCTGTTTTTCTTCTTCATCTTTGGTTCTATTCCATTTGTTCGTGCTCTTACTGATCCTTCTGATGTTCAAGCTTTGCAAGTTATGTACACCTCGTTGGACAGTCCTCCTCAGCTCACTGGTTGGATTGTTAGTGGAGGCGATCCATGTGCAGAATCATGGAAAGGGGTGACTTGTGAAGGGTCTGCTGTTGTCTCCATTGAGATTTCTGGATTAGGGCTGAATGGAACTATGGGTTATGCGCTTTCAAGTTTTTTGTCATTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACGCGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGTTTAATTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGATGTTTTCACCAATCTTACTACCCTGGAAACCATGGACCTTTCTTTCAACAATTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTGTCCAATGTTTCTTCCCTGTTTTTGCAGAACAACCGATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATTTATGATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCGCCTTTTACCCCACCTCCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTAGCAGTGGCACCCATACTGCACCAAGTTCTGAGGGCAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAGTTTTGGGTGCTATAATTTTTGTCCTTATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATCGGCACTAGCGTGAATGCTGAGGTGCAAGAGCATCGTGTAAAAAGCGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCGAAGAATGGATCAGTGAAAAGAATAAAGACCCCTATTACTGCTACTTCTTACACCGTTGCTTCTCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCCGAGTTTCCTAACGGGAAGACAATGGCGATTAAGAAAATCGATAATTCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAATATGTCAAGATTGAGGCATACAAACATTGTCACACTGAACGGTTATTGTGCAGAACATGGTCAGCGTCTTCTTGTTTACGAGTTCATTGGACATGGAAGTTTACATGACATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTGCTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTTGCCTTGTCAGGAATATACACCGTCAAGAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTCGTTAGATGGGCAACCCCTCAACTTCATGATATTGACGCCTTAGCAAAAATGGTAGATCCTACTTTGAATGGAATGTACCCTGCAAAATCTCTGTCACGCTTTGCGGACATCATTGCTCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCCATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGTGATGAGTCGGGATTCAGTTACAAAACACCCGAGCATGATGCAGTTGAGTTGCCATTTTGA 2136 43.59 MAFWPFFFLFFFFIFGSIPFVRALTDPSDVQALQVMYTSLDSPPQLTGWIVSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDAIPYQLPPNLTSLNMAKNSLIGNLPYSFSTMASLNYLNMSHNLLSQVIGDVFTNLTTLETMDLSFNNFTGDLPKSLGTLSNVSSLFLQNNRLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPKHPGSSSGTHTAPSSEGSSSHSNKGLPVLAIVGIVLGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKTPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKAEFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGHGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11171770 11178009 + PI0027494.1 Cmetu12g0052 371388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0052 711 Gene3D Transferase(Phosphotransferase) domain 1 482 704 - -
Cmetu12g0052 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmetu12g0052 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
Cmetu12g0052 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu12g0052 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cmetu12g0052 711 Pfam Protein tyrosine and serine/threonine kinase 408 677 IPR001245 GO:0004672|GO:0006468
Cmetu12g0052 711 SUPERFAMILY L domain-like 25 232 - -
Cmetu12g0052 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cmetu12g0052 711 Gene3D Ribonuclease Inhibitor 24 253 IPR032675 -
Cmetu12g0052 711 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Cmetu12g0052 711 MobiDBLite consensus disorder prediction 240 287 - -
Cmetu12g0052 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 682 IPR046959 -
Cmetu12g0052 711 MobiDBLite consensus disorder prediction 264 287 - -
Cmetu12g0052 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cmetu12g0052 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
Cmetu12g0052 711 CDD STKc_IRAK 409 680 - -
Cmetu12g0052 711 MobiDBLite consensus disorder prediction 244 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0236 Cmetu-Chr4:6476293 Cmetu12g0052 Cmetu-Chr12:11171770 7.20E-127 dispersed
Cmetu04g0850 Cmetu-Chr4:6243557 Cmetu12g0052 Cmetu-Chr12:11171770 2.80E-70 dispersed
Cmetu04g2239 Cmetu-Chr4:6484463 Cmetu12g0052 Cmetu-Chr12:11171770 2.80E-74 dispersed
Cmetu04g2436 Cmetu-Chr4:2302745 Cmetu12g0052 Cmetu-Chr12:11171770 4.00E-112 dispersed
Cmetu04g3017 Cmetu-Chr4:14760582 Cmetu12g0052 Cmetu-Chr12:11171770 5.40E-167 dispersed
Cmetu12g0052 Cmetu-Chr12:11171770 Cmetu08g0970 Cmetu-Chr8:21937004 1.10E-71 dispersed
Cmetu12g0052 Cmetu-Chr12:11171770 Cmetu03g0123 Cmetu-Chr3:18819169 8.50E-50 wgd
Cmetu12g0052 Cmetu-Chr12:11171770 Cmetu09g1411 Cmetu-Chr9:8256307 5.00E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu12g0052 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.4e-84 311.2
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu04g3017 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 6.3e-216 747.7
Cmetu01g1056 . 1 714 Strubbelig Receptor Gene Family AT1G53730 61.2 9.4e-188 654.1
Cmetu03g1756 . 15 683 Strubbelig Receptor Gene Family AT1G53730 50.6 4.4e-153 538.9
Cmetu04g3017 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 2.5e-190 662.5
Cmetu01g1056 . 6 704 Strubbelig Receptor Gene Family AT3G14350 56.4 4.5e-171 598.6
Cmetu12g0052 . 138 711 Strubbelig Receptor Gene Family AT4G22130 61.9 1.0e-181 633.6
Cmetu04g3017 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.0 1.1e-119 427.6
Cmetu01g1056 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.8 3.4e-116 416.0
Cmetu01g1679 . 486 764 Strubbelig Receptor Gene Family AT4G22130 59.8 1.6e-102 370.5
Cmetu03g1756 . 351 697 Strubbelig Receptor Gene Family AT4G22130 53.4 2.4e-98 356.7
Cmetu04g2436 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.4 6.4e-91 332.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70873 PF00069 Pkinase 3.60E-44 CL0016 Cmetu PK