Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0178 ATGGACAAACTGAATCGGAGTTCCGATAGAGGAATGGCGGCTTTTTCTTCTTCTGCCGACAGCAATACTAGGGCTCCTCCTACTACTTCCACTAGTACCAACAACAGACTTGCTGCACTTGTTCAATACAATGCTGATGCTGGCCTTTTGAACAAGTTTGAGCTCTCCGATGCTTCTGGTGAGTCTTTTAACTATTCAAGATCAGTTCTTGAAGCTCCTGTATCTGTTCCTGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAGAGGGGTGGTTTGGTTCAACCATTTGGTTGTTTGCTTGCTATTGAAGAATCTAGTTTTAAGATTATTAGTTTTAGTGAGAATTTTTTTGAATTACTGGGCCTTAATGATGATCAATTTGGGTCGGCACAGGGGAAGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCTGGTTCTTCTTTGGCCAAAGCGGCTTCTTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTTTATTCTAGGACTACCCAGAAGCCGTTTTATGCTATATTGCATAGAATTGATGTGGGGATTGTTATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCTGGTGCTGTGCAGTCACAGAAACTCGCGGTTAGAGCGATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTATTCTATGTGATACGGTTGTCGAAGATATTCAAAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGACGAACATGGTGAAGTAGTATCAGAAATCAGAAGGTCTGACTTAGAGCCATACCTTGGTTTACATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCATTAGAATGATTTGTGATTGCAATGCGAAGCCGGTGCCGGTCATTCAAAGTGATGATCTAAAGCAGCCTCTCTGTTTGGTAAATTCAACACTAAGAGCGCCACATAGCTGTCATTTGCAATACATGGCAAATATGAGTACCTTAGCTTCATTAGCAATGGCAATAGTCATGAACAGTGATGACTCACCAACAAGGCTATGGGGTCTGGTAGTGTGTCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGCGAGTTTCTCATGCAGGCGTTCGGGCTGCAGCTTTACATGGAACTTCAATTGGCATCACAATTAACAGAGAAAAAGATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCAAGTGCATTGCTGACTCGGTCTCCTAGTATAATGGATCTTGTGAAGTGTGATGGTGCTGCATTGTACTATAAAGGGGCGTGCTATTTGTTAGGTATAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAGTGGATACTCAATAATCATGGGGATTCTACAGGGCTGAGCACGGATAGTTTGGCTGATGCCGGCTACCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGCGGTATGGCAACTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAAGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGACGATAAGGATGATAGTGGAAGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAATTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATAATGAGGGAGTCTTTTCCGAACACTGGGGACAGTAATTCAAAGGCAGAAAATTCTCCCCAGTTGAGTGATGCTGAGATCCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACCGTTCCAATTTTTGGGGTTGACTCAACTGGTTTGATCAATGGATGGAATTCTAAAATTTCTGAACTTGTGGGATTACATACTGGAGAAGCTTTGGGGAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGCAGAAGATTTACTTTCCTGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTCGAACTGATAAAGAAAACTCTAACGTGTATATTGTAGTTAACGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACATTCGAGAAAGGTGTGATGGATAAATTTATCCGTCTGCAGGGAGATTATAAGACTTTCATTGAAAGTCTGAGTCCATTGATTCCTCCAATGTTTGTTTCAGATGAGAATGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAACTTACTGGTTGGAGGAAAAATGAAGTTGTAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTCTGTAGATTGAAAGGTCTAGATACCCTCACTAGGTTCATGATTCTATTATATCAAGGTATTAGTGGTCAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAATAAGGATGGGAATTATGTAGATGTGCTGTTAACATCGAACAAGAGAACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTACATGGGGTCTTGGAAGGACTTGGGACGGGTGATAGAGAGGCCGTTCTGCAGCATAAGGAGTTGAGCTTCTTAAAGCATGAGATGAAAAATCCTTTAAATGGTCTCAGATTTACGCATGAACTCCTTGTAAATTCTGGCATTACGGAAAACCAGAAACTTTTTCTAGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGGGGCCAAGTAGAGATCAACAGACAAGACTTTCTCCTTGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACGTTAACTCTTTGTGGCGACCAAATTAAGCTTCAGATGGTGTTATCAGATTTCTTACTTAACATAGTGCAGTACGCTCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAGCATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGGAATGTCCGCTATGTTAGAGAGCAAACAAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTCGATGGAAGCTACTACGAGCCAAAGGACTTGA 3402 41.98 MDKLNRSSDRGMAAFSSSADSNTRAPPTTSTSTNNRLAALVQYNADAGLLNKFELSDASGESFNYSRSVLEAPVSVPEEQITAYLSKIQRGGLVQPFGCLLAIEESSFKIISFSENFFELLGLNDDQFGSAQGKKGLIGVDMRALFTPSSGSSLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPGGDIGILCDTVVEDIQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCNAKPVPVIQSDDLKQPLCLVNSTLRAPHSCHLQYMANMSTLASLAMAIVMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLTEKKILKTQTLLCDMLLRGSPSALLTRSPSIMDLVKCDGAALYYKGACYLLGITPTEAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMATARITSKDFLFWFRSHVAKEIQWGGAKHHPDDKDDSGRMHPRSSFKAFLEVAKSRSLSWEIQEINAIHSLQLIMRESFPNTGDSNSKAENSPQLSDAEIQDINELSSVACEMVRLIETATVPIFGVDSTGLINGWNSKISELVGLHTGEALGKSLVNEIVHEDSRGTAEDLLSCALQGKEDKNVELKLRSFRTDKENSNVYIVVNACTSRDYTNKVVGVCFVGQDLTFEKGVMDKFIRLQGDYKTFIESLSPLIPPMFVSDENGYCCEWTAAMEKLTGWRKNEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGQVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNLHGVLEGLGTGDREAVLQHKELSFLKHEMKNPLNGLRFTHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDFRSLEGGQVEINRQDFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNIVQYAPVLDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRSRGSMEATTSQRT 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6008683 6014841 - PI0018726.1 Cmetu12g0178 371514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0178 1133 Gene3D PAS domain 87 334 - -
Cmetu12g0178 1133 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 246 265 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 331 352 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Cmetu12g0178 1133 ProSiteProfiles PAS repeat profile. 617 688 IPR000014 -
Cmetu12g0178 1133 Pfam His Kinase A (phospho-acceptor) domain 897 956 IPR003661 GO:0000155|GO:0007165
Cmetu12g0178 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 869 IPR035965 -
Cmetu12g0178 1133 Gene3D - 407 580 IPR043150 -
Cmetu12g0178 1133 SMART pas_2 619 686 IPR000014 -
Cmetu12g0178 1133 SMART pas_2 753 820 IPR000014 -
Cmetu12g0178 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 731 IPR035965 -
Cmetu12g0178 1133 CDD PAS 762 870 IPR000014 -
Cmetu12g0178 1133 Gene3D PAS domain 765 875 - -
Cmetu12g0178 1133 MobiDBLite consensus disorder prediction 10 35 - -
Cmetu12g0178 1133 Pfam PAS fold 751 870 IPR013767 GO:0006355
Cmetu12g0178 1133 Pfam PAS fold 620 734 IPR013767 GO:0006355
Cmetu12g0178 1133 FunFam Phytochrome 407 536 - -
Cmetu12g0178 1133 CDD HATPase_Phy-like 1004 1116 IPR044767 -
Cmetu12g0178 1133 Pfam PAS fold 83 198 IPR013654 GO:0006355
Cmetu12g0178 1133 PIRSF Phytochrome_conventional 15 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmetu12g0178 1133 SUPERFAMILY GAF domain-like 211 398 - -
Cmetu12g0178 1133 ProSitePatterns Phytochrome chromophore attachment site signature. 331 340 IPR013516 -
Cmetu12g0178 1133 Gene3D PAS domain 618 739 - -
Cmetu12g0178 1133 Gene3D - 934 1110 IPR036890 -
Cmetu12g0178 1133 ProSiteProfiles Histidine kinase domain profile. 899 1118 IPR005467 -
Cmetu12g0178 1133 CDD PAS 628 735 IPR000014 -
Cmetu12g0178 1133 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Cmetu12g0178 1133 SMART HKATPase_4 1004 1116 IPR003594 -
Cmetu12g0178 1133 Pfam GAF domain 233 402 IPR003018 GO:0005515
Cmetu12g0178 1133 Pfam Phytochrome region 415 587 IPR013515 GO:0006355|GO:0009584
Cmetu12g0178 1133 PANTHER OS08G0260000 PROTEIN 79 953 - -
Cmetu12g0178 1133 FunFam Phytochrome 764 872 - -
Cmetu12g0178 1133 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1004 1114 IPR003594 -
Cmetu12g0178 1133 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1114 IPR036890 -
Cmetu12g0178 1133 Gene3D - 212 563 IPR029016 -
Cmetu12g0178 1133 SMART HisKA_10 892 956 IPR003661 GO:0000155|GO:0007165
Cmetu12g0178 1133 NCBIfam PAS domain S-box protein 624 737 IPR000014 -
Cmetu12g0178 1133 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 231 392 IPR016132 -
Cmetu12g0178 1133 SUPERFAMILY GAF domain-like 410 587 - -
Cmetu12g0178 1133 CDD HisKA 897 952 IPR003661 GO:0000155|GO:0007165
Cmetu12g0178 1133 FunFam Phytochrome 613 745 - -
Cmetu12g0178 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 199 IPR035965 -
Cmetu12g0178 1133 SMART gaf_1 231 412 IPR003018 GO:0005515
Cmetu12g0178 1133 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0178 K12123 - - csv:101214900 2190.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1585 Cmetu-Chr6:5450876 Cmetu12g0178 Cmetu-Chr12:6008683 0.00E+00 dispersed
Cmetu12g0178 Cmetu-Chr12:6008683 Cmetu01g1156 Cmetu-Chr1:25085014 7.50E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34