Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0247 ATGACATTGCAGCCGATGGACCAGAATAAATTGGAAGCAGATTCTGAGTCAAAGGGTAGTCATAAAAGAAACCAAACTGTTGAGAGGTCGGGAAGTCCTCAGCATCAGAAGATTTCAGCTAGATGGGACCCAGATGAAGCATGCAGGCCTTTAGTTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCCTCAAGCTGAATGTTATGGTATATGCCGGATTGTCCCTCCATCTTCTTGGAATCCACCATGTGTGCTCAAGGAGAAATGTAAGTGGGAGAATGCCACGTTTTCCACTCGAATTCAGCAAGTCGACTTGCTACAAAATAGAGAACCCATGAAAAAGAAAAGTAGAGGCCGAAAACGCAAGCGAAGGAGGCAATCAAAAGCGGGGACATCAGCTAGAAGCACCAATCTTGGTGTAGAAGCAACTGTTACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGACTTCACACTTAAAGATTTCCAGGCATATGCAGACCATTTTAGGGAATGTTATTTTGGAATTAAGAAGGCTCAAGAAGATTTAAATTTTGATATTGAATCTAGCAAGAGATGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATATTGGCGGATAGTTGAAAAATCTAACGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACGTTTTGCAGTGGCTTTCCCAAGGCCTCATCCCTGGTAACTGAAGGAGATTTGGATCCGTATGTGAAGTCAGGTTGGAATCTTAATAACTTCCCTCGCTTGCAAGGCTCTGTTCTGTGCTTTGAGGAAAGTGATATATCTGGAGTACTGGTGCCATGGCTATATGTTGGAATGTGCTTTTCCTCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTGAACTATATGCACTGGGGAGATCCAAAAGTATGGTACGGAGTTCCTGGAAGCCACGCATCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGCTGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTTCTTAAATCTGAAGGAGTACCTGTATACCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTCCCAAGGGCATATCATGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTGGTTCATGGGCAAAATGCTGTAGAACTTTATAGTGCGCAACGACATAGGACATCACTTTCACATGATAAATTATTATTTGTTCTAGAAAAGAAAACTCCAAATAATCTAAATTGGAAAAGTGTCTGTGGAATAGATGGAGATCTTACAAAAGTGATCAAGACAAGAGTGAAGATGGAGGAGGAAAGAATGAATTGCCTCCCAACTAATATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAAAGAGAGTGTTATGCCTGCTTCTATGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCTGATCGGTTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCAAGTAGATGACAGGTGTGTGCTCTTTCGCTACAGTATAAATGAGTTGCACACACTTGTCAAAGCATTGGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAGAAGGACAATGAATCTGTAGCTAAGGTGGAGTTGGACAGCGGATTAAATGCAAAACCATCTTGGTCCCCACAAATAACAGATAAACTAAAAAGATCAGACGTTCCCTGCAGTTCGTCTAGCCATGCTTCTTCAGAAGTAGTGCAGTCAGAGTCTCACCGTGGATCACTTAGCCTTAATAATTCCAACCTTAGTTCAGATAGTCAGAATGACATTGTAAATAGTGAAGTTATGTTAATAAATAAAGGCAAGAAGGTGAAGCAGGAGTGTTGCATTGACTTGAACGTTGACATAATTTCTGAAGGGAATGCTAACTGTGGGCCCCACAAATCTGATACCAAGATAATCGTTGATTTGGAGGAAACGTACCCTTCGATGTATGAAGAAAAATACATTTGTAAAGCAGCACATGAATCGGAGTTGATGGATCTGGACACTGATCATGTAAACACTCTTCCAGTTCATGATTACTCTTCAAGTGTAAAAGGTGGTGTGAGATTATGCGGATCTAATGCCAGTAAGTTGTTCGGAGTTGATCTTTCCCAGTCGCAGTCTCAGTCGCAGTTAGCATTTCCATACAACAATTACTCAAAAGTAGAAACTTCAAAACATTTGGATAAAAGGATACCTTCTTGGTCAAGTTCTCATCTGAAAGTGTTTCCTTTTGTTGAACCTTTGAATATTGGAACCATTATGTTTGGAAAGCCTTGGCACTGCGAGAAGGCCATATTTCCAAAAGGTATTGCATAA 2484 40.86 MTLQPMDQNKLEADSESKGSHKRNQTVERSGSPQHQKISARWDPDEACRPLVDEAPVFYPTVEEFEDTLGYIAKIRPQAECYGICRIVPPSSWNPPCVLKEKCKWENATFSTRIQQVDLLQNREPMKKKSRGRKRKRRRQSKAGTSARSTNLGVEATVTSESDEKFGFNSGSDFTLKDFQAYADHFRECYFGIKKAQEDLNFDIESSKRWEPSVEDIEGEYWRIVEKSNDEVEVYYGADIESATFCSGFPKASSLVTEGDLDPYVKSGWNLNNFPRLQGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHASSLEAAMKKHLPDLFAEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSAQRHRTSLSHDKLLFVLEKKTPNNLNWKSVCGIDGDLTKVIKTRVKMEEERMNCLPTNMKLQKMESEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCQVDDRCVLFRYSINELHTLVKALEGGLDAIKEWASRYCKMEKDNESVAKVELDSGLNAKPSWSPQITDKLKRSDVPCSSSSHASSEVVQSESHRGSLSLNNSNLSSDSQNDIVNSEVMLINKGKKVKQECCIDLNVDIISEGNANCGPHKSDTKIIVDLEETYPSMYEEKYICKAAHESELMDLDTDHVNTLPVHDYSSSVKGGVRLCGSNASKLFGVDLSQSQSQSQLAFPYNNYSKVETSKHLDKRIPSWSSSHLKVFPFVEPLNIGTIMFGKPWHCEKAIFPKGIA 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8316492 8323816 + PI0020348.1 Cmetu12g0247 371583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0247 827 SMART JmjN_1 54 95 IPR003349 -
Cmetu12g0247 827 MobiDBLite consensus disorder prediction 1 42 - -
Cmetu12g0247 827 SMART cupin_9 263 429 IPR003347 -
Cmetu12g0247 827 SUPERFAMILY Clavaminate synthase-like 229 443 - -
Cmetu12g0247 827 ProSiteProfiles JmjN domain profile. 55 96 IPR003349 -
Cmetu12g0247 827 MobiDBLite consensus disorder prediction 121 152 - -
Cmetu12g0247 827 Pfam C5HC2 zinc finger 505 556 IPR004198 -
Cmetu12g0247 827 Pfam jmjN domain 56 89 IPR003349 -
Cmetu12g0247 827 MobiDBLite consensus disorder prediction 11 25 - -
Cmetu12g0247 827 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Cmetu12g0247 827 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Cmetu12g0247 827 Gene3D Cupin 40 413 - -
Cmetu12g0247 827 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 749 - -
Cmetu12g0247 827 MobiDBLite consensus disorder prediction 607 644 - -
Cmetu12g0247 827 MobiDBLite consensus disorder prediction 127 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0247 K11446 - - csv:101214856 1572.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1320 Cmetu-Chr5:15536076 Cmetu12g0247 Cmetu-Chr12:8316492 4.20E-191 dispersed
Cmetu12g0247 Cmetu-Chr12:8316492 Cmetu12g1299 Cmetu-Chr12:2897096 3.20E-38 dispersed
Cmetu12g0247 Cmetu-Chr12:8316492 Cmetu06g2594 Cmetu-Chr6:29888442 2.30E-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1320 . 42 1274 JUMONJI Transcription Factor Family AT1G08620 55.0 0.0e+00 1267.7
Cmetu12g0247 . 36 605 JUMONJI Transcription Factor Family AT1G08620 55.7 2.4e-183 640.2
Cmetu12g0247 . 27 587 JUMONJI Transcription Factor Family AT1G30810 61.4 1.5e-202 703.4
Cmetu12g0247 . 32 574 JUMONJI Transcription Factor Family AT2G34880 55.9 8.1e-180 627.9
Cmetu12g0247 . 63 657 JUMONJI Transcription Factor Family AT4G20400 55.2 1.8e-188 656.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8881 PF02373 JmjC 3.10E-45 CL0029 Cmetu TR