Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0459 ATGACTTCCGGTACGAGAATGCCGACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGTCGTCGTGCCATCGCCGCTAAGATCTTTCTTGGCTTGCGAATGTACGGAAACTACAAGCTTCCTAAGCACTGCGACAATAATGAAGTCCTTAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGGGCTGCAAGCCTGTGGAACGCGATATCATGGGTGGGTCAGCTTCTGCAAGTCCATGTTCATCTTATCAGCCGAGCCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCAAATCTTCCCGTTACGCCATGAATGGCAATGACAATGGTACTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTACTTGTGGCTCCATAAGTGCACCCGTCACCCCTCCATCAAGTTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGATAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGTTTGCCAACATCAACCCCGCAAAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGAAATCCTTTCGGATTCAAGGAGGCAATGTCTGCTGGAGTGTCTCGTAATTGGACTCCTACACAGAGCGGAACATGCTCGCCCACAGTTGCTGCAGGCATTGATCATACTTCAGACGTTCCTATGACAGATGGAACTGCAACGGACTTTGCCTTCGGAAGTTGTTCAATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCACGAGGAATGCATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGTACAAGGTAA 984 50.2 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPKSSRYAMNGNDNGTDPNSLIPWLKNLSSGSSSASSRLPHHLFITCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPTSTPQSPGRQVLADPAWLDSIRIPQSGPSSPTFSLVARNPFGFKEAMSAGVSRNWTPTQSGTCSPTVAAGIDHTSDVPMTDGTATDFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSSTR 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5830049 5832507 + PI0018348.1 Cmetu12g0459 371795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0459 327 MobiDBLite consensus disorder prediction 1 21 - -
Cmetu12g0459 327 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 327 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cmetu12g0459 327 MobiDBLite consensus disorder prediction 165 186 - -
Cmetu12g0459 327 MobiDBLite consensus disorder prediction 86 127 - -
Cmetu12g0459 327 MobiDBLite consensus disorder prediction 84 127 - -
Cmetu12g0459 327 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 141 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0459 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g2000 Cmetu-Chr7:7350818 Cmetu12g0459 Cmetu-Chr12:5830049 1.40E-119 dispersed
Cmetu08g1008 Cmetu-Chr8:21494058 Cmetu12g0459 Cmetu-Chr12:5830049 2.70E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0632 . 1 310 BZR Transcription Factor Family AT1G75080 59.4 1.4e-88 323.6
Cmetu08g1008 . 28 319 BZR Transcription Factor Family AT1G75080 58.9 1.8e-80 296.6
Cmetu03g0632 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 1.3e-86 317.0
Cmetu08g1008 . 28 317 BZR Transcription Factor Family AT1G19350 59.2 6.3e-78 288.1
Cmetu08g1008 . 6 319 BZR Transcription Factor Family AT3G50750 57.4 2.6e-77 285.8
Cmetu03g0632 . 1 310 BZR Transcription Factor Family AT3G50750 51.4 9.0e-62 234.2
Cmetu07g2000 . 77 325 BZR Transcription Factor Family AT4G18890 54.9 5.0e-49 191.4
Cmetu12g0459 . 80 327 BZR Transcription Factor Family AT4G18890 51.8 1.0e-46 183.7
Cmetu07g2000 . 1 325 BZR Transcription Factor Family AT1G78700 72.5 3.3e-116 415.2
Cmetu12g0459 . 1 327 BZR Transcription Factor Family AT1G78700 68.0 4.2e-103 371.7
Cmetu08g1008 . 28 200 BZR Transcription Factor Family AT4G36780 79.7 8.3e-65 244.2
Cmetu03g0632 . 33 204 BZR Transcription Factor Family AT4G36780 62.6 1.2e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8892 PF05687 BES1_N 9.50E-67 No_clan Cmetu TF