Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0492 ATGCAATTGCAAACTCGTAGAGTTCAATTAATTTTCTTAATTTTATGTCTATGTTCTCTCTTCATCAACGCCCGGCCCTTTCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGCGCCCCGCCGGACGACTCCTCCGATTCCGCCAACTCCGACTCCGCCGACTGGGACGAGTTCGGTGAACCCGAATCTCAAAATTCCGCCTTGGAACTTGACCCCGGTTCTTGGCGCCCCATTTTTGAACCGGATTCCCCCGCCTCCGCATCCGACTCCGACGCGCCCCAGGATCTGTACTACACTGCTTTAGGCAAAATGATGTCCGCGGTTAGCTCTGGTGACCTGAGGTTGATGGAAGATGCGGTAGCGGATATTGATCAAGCTGTCGTGGAGAGTGGGGATCCACACGCGCAATCGGTTCTAGGGTTGTTGTATGGAATGGGGATAATGAAGGAAACCAATAAGGCTAAGGCATTTATGTATCATCATTTTGCTGCTGAAGGGAATAAGCAGTCTAAGATGGCTCTTGCTTATATTTACTTCAGGCAAGAAGTAGCTATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGGATCCATAATGGAGCTGAGGAGAACAAGCAAGCCTTGAGAAAGTCTCGAGGAGAAGAGGATGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGCAATGCTGGAGCTATGTATAAAATTGGGTTATTTTACTACTTTGGACTTAGAGGGTTGAGGCGTGATCATGCTAAAGCATTGTCCTGGTTTTCCAAGGCCGTGGAGAAAGGTGAACCAAAGTCTATGGAATTACTTGGAGAGATATATGCAAGGGGGGCAGGAGTCGAAAGGGATTACACTAAGGCACTTCAATGGCTAACTCGTGCATCCAAGCAGCCATCATTTACTGCTTATAATGGCATGGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTATACCAAGGCCAAGGAGTACTTTGAGAAAGCTGCCGACAACGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGCATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAATGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAGATGTTTCATACGGGTGTTGGGCTCAAGAGGAATATTCCTATGGCTAGTGCATTGTACAAATTAGTTGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTCTTGTACGCAAGAATGGCTGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTTGGAGAATCTGGCCTTTGCACGGATGCAGAAAGACATCAGAGAGCTCATTCTCTATGGTGGCAAGCTTCCGAGCAGGGGAATGAACATGCTGCTTTACTGATTGGGGATGCATATTACTACGGTCGGGGAACTGACGTAGATTATGATCGTGCTGCGGAAGCCTACATGCATGCTAAATCCCAACTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACATGGTCTTGGCCTTCCATTTGATCTCCACCTAGCTAAGCGTTACTATGACCAAGCTCTGGAACTTGATCCAGCTGCCAGGTTGCCTGTCAAGTTGGCCCTAGTAAGCCTTTGGTTAAGGAAGAATCATGCTGACAGTTTTCTGGATTAG 1785 45.88 MQLQTRRVQLIFLILCLCSLFINARPFLIVISQDDLKDGAPPDDSSDSANSDSADWDEFGEPESQNSALELDPGSWRPIFEPDSPASASDSDAPQDLYYTALGKMMSAVSSGDLRLMEDAVADIDQAVVESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEGNKQSKMALAYIYFRQEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYKIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEKNYTKAKEYFEKAADNDESGGHYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGLCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRKNHADSFLD 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1577830 1581516 - PI0002268.2 Cmetu12g0492 371828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0492 594 Gene3D Tetratricopeptide repeat domain 83 195 IPR011990 GO:0005515
Cmetu12g0492 594 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 3 593 IPR044623 GO:0030433
Cmetu12g0492 594 SMART sel1 237 273 IPR006597 -
Cmetu12g0492 594 SMART sel1 274 309 IPR006597 -
Cmetu12g0492 594 SMART sel1 382 417 IPR006597 -
Cmetu12g0492 594 SMART sel1 346 381 IPR006597 -
Cmetu12g0492 594 SMART sel1 534 569 IPR006597 -
Cmetu12g0492 594 SMART sel1 310 345 IPR006597 -
Cmetu12g0492 594 SMART sel1 134 169 IPR006597 -
Cmetu12g0492 594 SMART sel1 498 533 IPR006597 -
Cmetu12g0492 594 MobiDBLite consensus disorder prediction 38 92 - -
Cmetu12g0492 594 SUPERFAMILY HCP-like 323 569 - -
Cmetu12g0492 594 SUPERFAMILY HCP-like 97 181 - -
Cmetu12g0492 594 Pfam Sel1 repeat 431 449 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 238 272 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 275 308 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 312 344 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 534 568 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 134 167 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 386 416 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 500 522 IPR006597 -
Cmetu12g0492 594 Pfam Sel1 repeat 349 380 IPR006597 -
Cmetu12g0492 594 Gene3D Tetratricopeptide repeat domain 205 588 IPR011990 GO:0005515
Cmetu12g0492 594 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 202 313 - -
Cmetu12g0492 594 SUPERFAMILY HCP-like 218 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0492 K14026 - - csv:101221047 1140.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38