Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0790 ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAATGCTTCTTTTCCTCTTCAATTGTTAGAGAAGAAAGAATATGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGACCGCCACACCAAAGTTGATGGCCGAGGACGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTTGGCCACAAATCCGATGGTGAAACGATCGAATGGCTTCTTCAGCAGGCCGAGCCTGCGGTTATTGCCGCTACGGGAACTGGTACCATACCGGCTAACTTCAACTCTCTTAACACGTCGTTAAGAAGATCGGCTACAAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTACCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGTCACAATTACCAAAAGAAGATCATCAGTACTATCTTCACCAATCCACCACAGGAGTAGTCCCCCCCACTACTATTCCGGCAAACTTTTGGATGCTTTCCGATCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCCGCTAATCAAGACGGCTCTTTATTCAGATCAGGACAATCCTCACCCTCCGGTGGCTTACGTTTATCGAATAATATTCTCGGCTCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACGATCATGATGATGATGGACACTTGAATATCTATGCCGCCCAAAATCCACCGCATGGGGCGGCGCCGGACACCGGCGTCTCGTAA 876 48.52 MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITSQLPKEDHQYYLHQSTTGVVPPTTIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSGQSSPSGGLRLSNNILGSAPLTLLPGKPLSLGPTAGAARRGNLNDHDDDGHLNIYAAQNPPHGAAPDTGVS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 402509 404749 - PI0013339.1 Cmetu12g0790 372126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0790 291 MobiDBLite consensus disorder prediction 1 61 - -
Cmetu12g0790 291 MobiDBLite consensus disorder prediction 43 61 - -
Cmetu12g0790 291 Pfam TCP family transcription factor 47 147 IPR017887 -
Cmetu12g0790 291 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 166 IPR005333 GO:0003700
Cmetu12g0790 291 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g0777 Cmetu-Chr10:17514972 Cmetu12g0790 Cmetu-Chr12:402509 5.10E-34 dispersed
Cmetu11g0058 Cmetu-Chr11:1637357 Cmetu12g0790 Cmetu-Chr12:402509 4.10E-29 dispersed
Cmetu11g0225 Cmetu-Chr11:150779 Cmetu12g0790 Cmetu-Chr12:402509 4.30E-28 dispersed
Cmetu11g0363 Cmetu-Chr11:5609806 Cmetu12g0790 Cmetu-Chr12:402509 4.40E-20 dispersed
Cmetu06g1199 Cmetu-Chr6:21229327 Cmetu12g0790 Cmetu-Chr12:402509 1.70E-29 transposed
Cmetu10g1669 Cmetu-Chr10:19329286 Cmetu12g0790 Cmetu-Chr12:402509 2.20E-39 wgd
Cmetu12g0790 Cmetu-Chr12:402509 Cmetu02g1507 Cmetu-Chr2:23752579 1.10E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1538 . 43 260 TCP Transcription Factor Family AT5G23280 62.2 1.7e-64 243.0
Cmetu10g1064 . 34 256 TCP Transcription Factor Family AT5G23280 59.6 7.6e-60 227.6
Cmetu11g0225 . 56 314 TCP Transcription Factor Family AT2G45680 53.4 5.2e-62 235.3
Cmetu10g1669 . 69 163 TCP Transcription Factor Family AT3G47620 89.7 9.0e-41 165.2
Cmetu12g0790 . 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.3e-39 161.4
Cmetu10g0777 . 35 154 TCP Transcription Factor Family AT3G47620 65.9 1.0e-36 151.8
Cmetu10g0777 . 35 136 TCP Transcription Factor Family AT1G69690 77.9 6.9e-37 151.8
Cmetu06g1199 . 43 296 TCP Transcription Factor Family AT3G27010 54.6 3.6e-59 225.7
Cmetu10g1064 . 4 254 TCP Transcription Factor Family AT5G08330 55.7 1.3e-64 243.4
Cmetu09g1538 . 30 259 TCP Transcription Factor Family AT5G08330 60.6 2.9e-64 242.3
Cmetu10g0777 . 34 268 TCP Transcription Factor Family AT1G35560 50.2 8.8e-43 171.4
Cmetu02g1260 . 40 139 TCP Transcription Factor Family AT5G60970 76.2 2.1e-39 160.2
Cmetu07g0568 . 38 131 TCP Transcription Factor Family AT3G02150 77.1 9.8e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8908 PF03634 TCP 1.20E-35 No_clan Cmetu TF