Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0797 ATGGGTCGTCAAGCTGTTGCCAAGCTCATAGGGTCGGCCATTAATCGCAAAACTTCATCTTCATCATCATCTTCTGTGTTTTCGCGTGCGGCGTCGCAGATTCGGCATTACTCCGCTGCTCCGTCACCTCCACCGGCAGTTTTTGTTGATAAGAATACTCGCGTTATATGTCAAGGGATCACTGGTAAAAACGGTACATTTCATACGGAACAGGCCATCGAATATGGCACCAAAATGGTTGGTGGTGTAACGCCAAAGAAGGGTGGAACGGAACACTTGGGGCTTCCTGTTTTTAACTCAGTTGCTGAAGCCAAAGCTGAAACGAAGGCCAATGCATCAGTTATTTATGCAATGGAAGCTGAGTTAGATCTTGTTGTTTGTATAACGGAAGGGATCCCACAACATGATATGGTGCGAGTTAAGGCTGCGTTAAACAAACAATCTAAAACTAGATTGATTGGCCCTAATTGCCCTGGCATTATCAAGCCTGGAGAATGTAAAATCGGAATTATGCCTGGATACATCCACAAACCTGGCCGCATTGGCATTGTATCACGATCTGGTACCTTGACCTATGAAGCTGTTTTTCAAACAACTGCTGTTGGCCTTGGACAATCCACATGCGTAGGTATTGGAGGGGATCCCTTTAACGGGACAAACTTTGTTGATTGCATCGAGAAGTTCCTTGCTGATCCTCAGACAGAAGGTATTGTTCTAATTGGAGAAATAGGTGGAACTGCTGAGGAGGATGCTGCCGCTTTGATAAAGGAAAGTGGGACTGATAAGCCTATTGTTGGATTCATTGCTGGCCTAACTGCTCCTCCAGGCCGTCGCATGGGTCATGCTGGCGCCATTGTTTCAGGTGGAAAAGGAACAGCCCAAGACAAAATCAAGACACTACGGGAAGCTGGAGTAACGGTGGTCGAGTCACCTGCAAAAATTGGCGTGTCAATGCTTGAAGTTTTCAAACAGAGAGGCCTCGTTAGTTAG 990 46.36 MGRQAVAKLIGSAINRKTSSSSSSSVFSRAASQIRHYSAAPSPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYAMEAELDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTDKPIVGFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVSMLEVFKQRGLVS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1803207 1807482 - PI0017697.1 Cmetu12g0797 372133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0797 329 SUPERFAMILY Succinyl-CoA synthetase domains 156 324 IPR016102 -
Cmetu12g0797 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 155 IPR036291 -
Cmetu12g0797 329 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 270 283 IPR017440 -
Cmetu12g0797 329 SMART CoA_binding_2 48 132 IPR003781 -
Cmetu12g0797 329 PRINTS Succinyl-CoA synthase signature 274 291 - -
Cmetu12g0797 329 PRINTS Succinyl-CoA synthase signature 114 131 - -
Cmetu12g0797 329 PRINTS Succinyl-CoA synthase signature 210 228 - -
Cmetu12g0797 329 PRINTS Succinyl-CoA synthase signature 241 254 - -
Cmetu12g0797 329 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 185 214 IPR033847 -
Cmetu12g0797 329 Pfam CoA binding domain 50 117 IPR003781 -
Cmetu12g0797 329 NCBIfam succinate--CoA ligase subunit alpha 48 321 IPR005810 GO:0003824
Cmetu12g0797 329 Gene3D - 46 153 - -
Cmetu12g0797 329 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 45 322 IPR005810 GO:0003824
Cmetu12g0797 329 Gene3D - 154 327 IPR016102 -
Cmetu12g0797 329 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 24 327 - -
Cmetu12g0797 329 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 154 327 - -
Cmetu12g0797 329 PIRSF SucCS_alpha 44 325 IPR005810 GO:0003824
Cmetu12g0797 329 Pfam CoA-ligase 184 305 IPR005811 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0797 K01899 - - csv:101206269 615.535
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28