Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0829 ATGCAAGGGGCTCCAAATGAAGATCAAACAAAAGCTTCAACAATAATCCAAAAGCAAAAGTGCCCTCGTTGCGACTCTTCCAACACCAAATTTTGTTATTACAATAACTACAGCCTTTCACAGCCTCGTTACTTTTGTAAGTCTTGTCGACGCTACTGGACTCATGGCGGCACTCTCCGTAACGTCCCCATCGGCGGTGGCTCGAGAAAATCCAAGCGCCCTAAGTCAACATTATTGCCTTCCTCTTCTTCTGACACATCGACCCTAATTCCGCCCCCGGCCGGAGGATCAGGACCTCTTGATCTTGCAACTTCTTCTTATTCTAGTGCTGCCTTTTTGCCATCCTTGGATGTGGGGGCTGCTTATAATTCATTTGGAGGATTGGCTTGGACTACTCCCATCAACAACACAATTATTACTAATAATCATTCTTCCTCTTCAGGTAATAACCAAAATTCTAGCTTTCAAATTGAAAATAATTCTTCTACTTTGCTCCCAAATCATCTCTCTCCCTTTCACCATCCCGAGTAA 531 43.88 MQGAPNEDQTKASTIIQKQKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKSKRPKSTLLPSSSSDTSTLIPPPAGGSGPLDLATSSYSSAAFLPSLDVGAAYNSFGGLAWTTPINNTIITNNHSSSSGNNQNSSFQIENNSSTLLPNHLSPFHHPE 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5208364 5209324 + PI0021658.1 Cmetu12g0829 372165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0829 176 Pfam Dof domain, zinc finger 18 73 IPR003851 GO:0003677|GO:0006355
Cmetu12g0829 176 ProSiteProfiles Zinc finger Dof-type profile. 19 73 IPR003851 GO:0003677|GO:0006355
Cmetu12g0829 176 MobiDBLite consensus disorder prediction 142 168 - -
Cmetu12g0829 176 MobiDBLite consensus disorder prediction 74 91 - -
Cmetu12g0829 176 MobiDBLite consensus disorder prediction 63 97 - -
Cmetu12g0829 176 MobiDBLite consensus disorder prediction 142 176 - -
Cmetu12g0829 176 ProSitePatterns Zinc finger Dof-type signature. 21 57 IPR003851 GO:0003677|GO:0006355
Cmetu12g0829 176 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 155 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0829 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0488 Cmetu-Chr4:2069997 Cmetu12g0829 Cmetu-Chr12:5208364 3.60E-27 dispersed
Cmetu12g0829 Cmetu-Chr12:5208364 Cmetu12g2016 Cmetu-Chr12:2441278 1.50E-25 dispersed
Cmetu12g0829 Cmetu-Chr12:5208364 Cmetu12g1136 Cmetu-Chr12:5217211 2.50E-25 tandem
Cmetu12g0829 Cmetu-Chr12:5208364 Cmetu04g2608 Cmetu-Chr4:2062507 2.30E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g742 . . . . . . Bma06g00234 . . . . . . . . Cpe20g00240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00167 . . . . Bhi08g01605 Tan05g3313 Cmetu12g0829 Lac10g0894 Hepe07g1903 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8909 PF02701 zf-Dof 7.20E-34 No_clan Cmetu TF