Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0935 ATGACTCGCTTGAATATACAGCAAGTTCTCAACGATAACGAAACCAAAGACCCACTCACCATCACTACTCTCAAACTCAATCAAAAGGCTCTTTCTGATATAAATGGTTTGTCCCTTTTCAAAAACTTGGAGAAGCTCGATTTGACATTCAACAATCTCACATCGCTTCAGGGGTTGGAGTCATGCACTAATTTGAAGTGGCTCTCAGTTGTACAAAACAAACTTGATAGCTTAAAAGGAATTGAAGGGCTTTCTAAACTTACTGTATTAAATGCGGGAAAGAATAAGCTTCGGTCAATGGACGAAATTAGACCCCTTGTTGGCTTATGTGCTTTGATTTTGAATGACAATGAGATTGCTTCTATTTGCAAGCTTGATCAGATGAAGAACCTGAATACTCTGGTTCTTTCTAGAAATCCAATCCGTAGTATTGGAGATTCTCTGTTGAAAGTGAAATCAATGAAAAAGCTATCCTTTTCTAACTGCAAACTTCAATCTATTGATTCATCCCTCAAGTCTTGTATCGAACTGAAAGAGCTTCGACTTGCTCACAATGAAATCAAGATACTCCCCAATGATTTGGCTCATAACAAGAAGTTGTTGAATTTGGATTTGGGAAATAATGTCATCATGAGATGGTCAGATTTAAAGGTATTGAGTTCATTAGGCTATCTGAGGAATCTTAATCTTCAAGGGAATCCTATTGCTGAAAGTGCTAAGTTAGATAAAAAGATTCGTCGACTGGTTCCAGGCTTGCGTGTATTGAATGCTAGACCAATTGATAAATGCATTCAGAATGAGAATGATAATGGGAGTGATAAAGAAGACGACACTCCAATCAGGAACCTAGAGCGTCAAAAAGTGAAAAAGGATAAAAAACTGAATGGGGATGTTGAAGCACACACGTCTGTTCAAGGCACTGGCACTGATGACAAACTTGATCAGGTTGATGATGTTGACATGGAAAGAAAGTCGGAACACAAAAAACGCAAGATGGACAAGGTCACCAGGGAGGAGAAAGAAGTTCCATCTCTTGACAATAAGATGATGTTGACCGATTATATTGATGAGGATAAGAAGACTTCAAAGCAGAAAAGAGCAAAAAGCAATAAGGAGCCATCTTCGCCAATACACAAGGAGACGCTTACCAAGATTGAAAAGCAGAAGAAGAAAGCAAAGAAGGAAGGGGAAAGGCAGGTTGATGTTATTGACGACACTGAAGTGCCATTCGAACAGCTTTTTGGGGACGATCAAGTTGAAGACATGGATGCTGTTCTCAGAAAGGTTGATGAGAAAGCAGTAGAGGAGATGAATTTAAAGCCTAGCTTGGTATCATTTTCAGCTAATAGAAAGGAATCTAAAAGGCAAGATCGAGTTGGAAGGTTACAAATATCTCCAATAGTTGAAATTGGAATGGGCGGACTATCAACATGGGGTGATGAGTAA 1446 39.0 MTRLNIQQVLNDNETKDPLTITTLKLNQKALSDINGLSLFKNLEKLDLTFNNLTSLQGLESCTNLKWLSVVQNKLDSLKGIEGLSKLTVLNAGKNKLRSMDEIRPLVGLCALILNDNEIASICKLDQMKNLNTLVLSRNPIRSIGDSLLKVKSMKKLSFSNCKLQSIDSSLKSCIELKELRLAHNEIKILPNDLAHNKKLLNLDLGNNVIMRWSDLKVLSSLGYLRNLNLQGNPIAESAKLDKKIRRLVPGLRVLNARPIDKCIQNENDNGSDKEDDTPIRNLERQKVKKDKKLNGDVEAHTSVQGTGTDDKLDQVDDVDMERKSEHKKRKMDKVTREEKEVPSLDNKMMLTDYIDEDKKTSKQKRAKSNKEPSSPIHKETLTKIEKQKKKAKKEGERQVDVIDDTEVPFEQLFGDDQVEDMDAVLRKVDEKAVEEMNLKPSLVSFSANRKESKRQDRVGRLQISPIVEIGMGGLSTWGDE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16714182 16718884 - PI0025397.1 Cmetu12g0935 372271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0935 481 ProSiteProfiles Leucine-rich repeat profile. 199 220 IPR001611 GO:0005515
Cmetu12g0935 481 SMART LRR_typ_2 174 197 IPR003591 -
Cmetu12g0935 481 SMART LRR_typ_2 40 62 IPR003591 -
Cmetu12g0935 481 SMART LRR_typ_2 128 151 IPR003591 -
Cmetu12g0935 481 MobiDBLite consensus disorder prediction 311 342 - -
Cmetu12g0935 481 ProSiteProfiles Leucine-rich repeat profile. 64 85 IPR001611 GO:0005515
Cmetu12g0935 481 PANTHER LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED 1 277 - -
Cmetu12g0935 481 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
Cmetu12g0935 481 MobiDBLite consensus disorder prediction 263 342 - -
Cmetu12g0935 481 SUPERFAMILY L domain-like 16 256 - -
Cmetu12g0935 481 MobiDBLite consensus disorder prediction 356 399 - -
Cmetu12g0935 481 Gene3D Ribonuclease Inhibitor 152 277 IPR032675 -
Cmetu12g0935 481 SMART LRR_sd22_2 40 61 - -
Cmetu12g0935 481 SMART LRR_sd22_2 197 218 - -
Cmetu12g0935 481 SMART LRR_sd22_2 84 105 - -
Cmetu12g0935 481 SMART LRR_sd22_2 106 127 - -
Cmetu12g0935 481 SMART LRR_sd22_2 62 83 - -
Cmetu12g0935 481 ProSiteProfiles Leucine-rich repeat profile. 42 63 IPR001611 GO:0005515
Cmetu12g0935 481 MobiDBLite consensus disorder prediction 267 298 - -
Cmetu12g0935 481 Gene3D Ribonuclease Inhibitor 2 151 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0935 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012751 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 0 1 1 1 1 28