Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0970 ATGGTCGAATTGGTTGATAAAGTTCCCTCCTCATCAGAGGTTGAGGCAATGAACAAAAGGCGCAAGAGAAAGAGACCCAAGAAAAATCTTCCTTCAACTGCTGCGGAAGAATCCGAACTTCAAAATTCAATGCAAGGCGAAGAAGAAGGGGAAGAAGATGGTGGAAGCAATGAACCAGAGGAGAAAGTGAAAAAAAACGAGATGAAGAAGAAGAGGAAGACGAAGACGAAAACAAAGGTGAAGGGCGAGTTGGAAGAAGAAGGGAACGATGATGTAAACGATGGCGAGGGTGAGGATGGCGTGGAAGGGGAGGGTGAGGAGGATGACGAGAAAGAGAATAAGAAAAATAAGGTTAAGACTGGTGGGTCAGGAATAATGAGTTCCGTTTCATTTGATTCGCTTGAATTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAATTGGGAAAGATATTCTTGGAGCTGCAAGAACTGGATCCGGGAAAACTCTTGCTTTTCTTATACCAGCTGTGGAGTTGCTACATCACATTTGCTTTACTCCTCGTAATGGAACTGGTGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGGATTACAAAGGGGGTCAATCTATTAATAGCAACCCCTGGTCGTCTTCTTGACCATCTACAGCACACCAAGAATTTTGTGTTCAAAAACTTGAAGTGCCTCATAATTGATGAAGCAGATAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAATCTTCTCCCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTGGAAGATCTTGTTCGCTTGTCATTTCAGTCAACTCCTATTTATATTGATGTGGATGATGGAAGAACAAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTGTGCCCAGCTCTAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAAAAATTTGTCCAAGAAAGTAATGGTCTTCTTCTCATCTTGTAACTCTGTGAAATTCCATGCGGACCTTCTTAGATATATCAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCGAGACTGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGATATACCCGCTGTCGATTGGATTGTGCAGTACGATCCTCCAGATGAACCAAAGGAATATATTCACAGAGTTGGTCGAACAGCTCGAGGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGAGCTTCAATTTCTTCGCTATCTGAAGGCAGCAAAAGTTCCAGTCAAAGAGTATGAGTTCAGCGATAAGAAACTGGCCAACGTGCAATCTCATCTGGAAAAACTAGTTGGCAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTATAGATCCTATATATTAGCTTACAATTCACACTCAATGAAAGATATTTTCAATGTCCACCGCCTTGATCTTCAGGGTATTGCTGCCTCATTCTGCTTTTCCAACCCTCCAAAGGTGAACCTTAACATTGACAGCAGTGCCTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGCATCAACAACAGATTCAGTAAGAGCAAGAAAGAGGGAGATGACAGACAATTTGTAAGATACTAA 1836 42.16 MVELVDKVPSSSEVEAMNKRRKRKRPKKNLPSTAAEESELQNSMQGEEEGEEDGGSNEPEEKVKKNEMKKKRKTKTKTKVKGELEEEGNDDVNDGEGEDGVEGEGEEDDEKENKKNKVKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQARAIPPSLIGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIINLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKKNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSKGNALLFLIPEELQFLRYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGINNRFSKSKKEGDDRQFVRY 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1064872 1069586 + PI0028128.1 Cmetu12g0970 372306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0970 611 SMART DUF4217_3 510 573 IPR025313 -
Cmetu12g0970 611 SMART ultradead3 148 353 IPR014001 -
Cmetu12g0970 611 Pfam DEAD/DEAH box helicase 153 324 IPR011545 GO:0003676|GO:0005524
Cmetu12g0970 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 491 IPR027417 -
Cmetu12g0970 611 CDD DEADc_DDX18 140 337 IPR044773 GO:0003724|GO:0005524
Cmetu12g0970 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Cmetu12g0970 611 MobiDBLite consensus disorder prediction 87 107 - -
Cmetu12g0970 611 Pfam Helicase conserved C-terminal domain 366 469 IPR001650 -
Cmetu12g0970 611 MobiDBLite consensus disorder prediction 1 123 - -
Cmetu12g0970 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 335 IPR014001 -
Cmetu12g0970 611 MobiDBLite consensus disorder prediction 42 56 - -
Cmetu12g0970 611 CDD SF2_C_DEAD 350 480 - -
Cmetu12g0970 611 PANTHER RNA HELICASE 71 517 - -
Cmetu12g0970 611 FunFam RNA helicase 346 576 - -
Cmetu12g0970 611 Gene3D - 105 341 IPR027417 -
Cmetu12g0970 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 519 IPR001650 -
Cmetu12g0970 611 SMART helicmild6 389 470 IPR001650 -
Cmetu12g0970 611 Pfam Domain of unknown function (DUF4217) 511 571 IPR025313 -
Cmetu12g0970 611 Gene3D - 346 595 IPR027417 -
Cmetu12g0970 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0970 K13179 - - csv:101209673 1048.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0624 Cmetu-Chr5:46790 Cmetu12g0970 Cmetu-Chr12:1064872 1.60E-68 dispersed
Cmetu06g1865 Cmetu-Chr6:26087216 Cmetu12g0970 Cmetu-Chr12:1064872 5.40E-90 dispersed
Cmetu09g1245 Cmetu-Chr9:2214540 Cmetu12g0970 Cmetu-Chr12:1064872 1.20E-45 dispersed
Cmetu09g1866 Cmetu-Chr9:444401 Cmetu12g0970 Cmetu-Chr12:1064872 1.60E-57 dispersed
Cmetu10g0400 Cmetu-Chr10:18860441 Cmetu12g0970 Cmetu-Chr12:1064872 9.50E-21 dispersed
Cmetu11g1666 Cmetu-Chr11:8603743 Cmetu12g0970 Cmetu-Chr12:1064872 5.80E-56 dispersed
Cmetu12g0970 Cmetu-Chr12:1064872 Cmetu12g1190 Cmetu-Chr12:1652593 4.30E-64 dispersed
Cmetu12g0970 Cmetu-Chr12:1064872 Cmetu10g1771 Cmetu-Chr10:13937732 3.50E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51