Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g0983 ATGGGGAAAGATTACTATAACATACTCAAAGTAAGCCGAAGCGCTAGCGATGAAGATTTGAAGAGAGCTTACAAAAGATTAGCTTTGTTTTGGCATCCCGACAAGAACCCTTCTAACAAACACGAAGCTGAAGCCAACGATCCTCAAAAGCGTCAGATCTACGACCTTTATGGTGAAGAAACCCTCAAGTCCGGCAAGATTCCGCCGCCCAATGCTCACGCCACTTCCTCCTCTGCTTATTCTCCCGTTTACCAGCACTTTCAACGCCAGCATCCCAATACTTCTACGTTTAAGTTCAATCCCAGGAACGCAGATGATATTTATGCGGAATTTTTCGGATCCGAGGGCGGTGGCGGGAGTAATAATGTCGATGGGGGTGGGAAGAGTAGAGGGGTTAGGGATGAGTTTTTTAGGTTTCAGAATGGGATGGAGAATGGGAGTGGTGCTAAAGGGAGGAAGGCAGCTGCGGTTGAGAGTGCGTTGCCTTGTACCTTGGAAGAGCTATTTAAAGGCGCCAAAAAGAAGATGAGAATTTCGAGAAATGTTTATGATGTCTCTGGCAAGTTCCGGACAGTTGAAGAGATATTGACAATAGACATAAAGCCAGGGTGGAAGAAGGGGACAAAGATCACTTTTCCTCAGAAAGGAAATCAGGAGCCTGGCATCATTCCAGCAGATCTTATATTTGTAGTGGATGAGAAACCACATGCTATATACCGGAGAGATGGGAATGATCTAGTGGTGAACCATGAAATAACGCTCCTGGAATCACTCACAGGTAAAACTCTTGAACTTACTTCTCTGGATGGAAGGACTCTCACGATCCCTATAACGGATATTGTCAAACCTGGTGATGAGATGGTTCTGGCAAATGAAGGAATGCCAATCTCAAAGGAACCTGGGAAGAAAGGAAATTTGAGAATCAAATTTGATGTCAAATATCCATCAAGGCTTACAACAGAACAGAAGTCTGATCTAATAAGAGTTCTTGGTGTAGTTTCATAG 1005 44.18 MGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPSNKHEAEANDPQKRQIYDLYGEETLKSGKIPPPNAHATSSSAYSPVYQHFQRQHPNTSTFKFNPRNADDIYAEFFGSEGGGGSNNVDGGGKSRGVRDEFFRFQNGMENGSGAKGRKAAAVESALPCTLEELFKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGIIPADLIFVVDEKPHAIYRRDGNDLVVNHEITLLESLTGKTLELTSLDGRTLTIPITDIVKPGDEMVLANEGMPISKEPGKKGNLRIKFDVKYPSRLTTEQKSDLIRVLGVVS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2141736 2144199 - PI0020612.1 Cmetu12g0983 372319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g0983 334 Gene3D - 155 234 - -
Cmetu12g0983 334 FunFam Dnaj homolog subfamily b member 153 234 - -
Cmetu12g0983 334 CDD DnaJ_C 161 318 - -
Cmetu12g0983 334 Gene3D DnaJ domain 2 124 IPR036869 -
Cmetu12g0983 334 Pfam DnaJ C terminal domain 158 315 IPR002939 -
Cmetu12g0983 334 SUPERFAMILY Chaperone J-domain 3 66 IPR036869 -
Cmetu12g0983 334 CDD DnaJ 4 45 IPR001623 -
Cmetu12g0983 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 159 236 IPR008971 GO:0006457|GO:0051082
Cmetu12g0983 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 239 324 IPR008971 GO:0006457|GO:0051082
Cmetu12g0983 334 ProSiteProfiles dnaJ domain profile. 4 58 IPR001623 -
Cmetu12g0983 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 330 - -
Cmetu12g0983 334 Pfam DnaJ domain 4 45 IPR001623 -
Cmetu12g0983 334 SMART dnaj_3 3 67 IPR001623 -
Cmetu12g0983 334 PRINTS DnaJ domain signature 50 69 IPR001623 -
Cmetu12g0983 334 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cmetu12g0983 334 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cmetu12g0983 334 Gene3D - 236 316 - -
Cmetu12g0983 334 FunFam DNAJ heat shock family protein 235 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g0983 K09510 - - csv:101215798 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1242 Cmetu-Chr10:20947088 Cmetu12g0983 Cmetu-Chr12:2141736 3.80E-32 dispersed
Cmetu12g0983 Cmetu-Chr12:2141736 Cmetu08g0755 Cmetu-Chr8:23023304 1.30E-06 dispersed
Cmetu07g1097 Cmetu-Chr7:19846693 Cmetu12g0983 Cmetu-Chr12:2141736 2.30E-41 transposed
Cmetu10g0412 Cmetu-Chr10:19063359 Cmetu12g0983 Cmetu-Chr12:2141736 5.70E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38