Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1017 ATGGGCAATGGCGGCGAAAGTATGGCGTTGGCTGTTTGCAGCGATAGAAACATGGGATTGGGGATTACTATTTGGGATATGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCGTACGGCTTTATTTGCTTGGGAAAAGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATCTTCATTTGGTCACTCAACAAGCCTCAGCCACCTGTTATGAGCTATACATTAGAGACCATTGGACCACTCGCCTCAACAAAGGATAGTGTATATCTTGCAGGCGGAACTCATTCAGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAACTGCTCAAGCTTTGGAGTGGTCATCACAAACCTGTAAAGTGTGTCCTATTTTCTTGGGACGATTCATTTCTCATTACTGGTTCAGCTGACGGAATGATTTGTGTCTGGTCCATGATTGGTTTGCTGGATGTGGAACTTGTGGGAAGCTCACAGCCAATAGTGTATTGTCTCATGGAACATCAGTCATCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGACGTCGATAATCATTTCAAGCTCCCTTGATGGCAGTTTAAAGGTTGTTTGTGGTGGACATGTTAATTCAACATTGCAAAATGAGAGAGATGAGATAGGAAAAAGCAGTGGTAAAGGTCTGATTGGGCAGCTGAAGAAGGTTGTTTTGGCTTACAGTGGTGGCTTGGACACATCAGTCATTGTCCCATGGCTACGGGAGAATTATGGTTGTGAAGTTGTTTGTTTTACTGCAGATGTTGGTCAAGGTATGAAGGAATTGAAAGGTTTAGAAAAGAAAGCTATAGCAAGTGGAGCTTCAAAATTGGTAGTAAAGGATTTAAAGGAAGAATTTGTAAAAGACTTCATATTTCCTTGTTTACGTGCTGGTGCTATTTATGAAAGAAAATACCTTCTTGGAACATCCATGGCTCGTCCCGTTATCGCAAAGGCGATGGTGGATGTTGCAAATGAAGTTGGGGCAGATGCAGTTTCTCATGGATGCACTGGAAAAGGAAATGATCAAGTAAGGTTTGAATTGGCATTTTTTGCTCTAAATCCAAATCTAAAAGTGGTGGCACCATGGAGAGAATGGGATATTACTGGAAGACAAGATGCTATTGAGTATGCGAAGAAGCATAATATACCCATTCCTGTCACTAATGAATCCATTTATAGTCGAGACGCCAATCTGTGGCATCTTAGTCACGAGGGAGATGTTTTGGAGGATCCAACAAATGAACCTAAGAAGGACATGTATATGATATCTACAGATCCAGAAGATGCACCAAATGAACCTGAATACGTAGAAATAGGTATTGAGGGAGGTCTCCCTGTTTCCATCAATGGCGAAGTTCTTTCACCAGCCTCTCTTATCTCCAAAGCAAACCACATTGGTGGGAAGCACGGAATCGGGAGAATCGACATGGTTGAAAATCGTCTCGTCGGCATGAAAAGCAGAGGCGTTTACGAAACTCCAGGAGGAACCATCCTTTTTGCAGCCGTCCGTGAGCTCGAGTCTCTGACACTCGACCGAGAGACGATTCAAGTGAAAGACTCATTGGCTCTGAAATATGCAGAGTTGGTTTATGCAGGAAGATGGTTCGACCCTCTTCGTGAATCCATGGATGCTTTCATGAAGAAGATCACAGAGACCACCACTGGCTCTGTTTCTCTCAAGCTTTATAAGGGTTCCGTCCAAGTCGCCGGCCGCCGGAGTCTTTATAGTCTTTATAGGGAAGATATTTCGTCCTTTGAAAATGGGCAGATTTACAATCAAGCTGATGCTGCTGGTTTCATTCGCCTTTATGGCCTTCCCACCAGAGTTAGAGCAATGCTCAATAAGAGGTTGTGA 1911 44.01 MGNGGESMALAVCSDRNMGLGITIWDMKTGQTLLHIPTCASPPYGFICLGKEFLVASQTRKEGSVGGGSIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGKLLKLWSGHHKPVKCVLFSWDDSFLITGSADGMICVWSMIGLLDVELVGSSQPIVYCLMEHQSSLTGLLTMSGCSTSIIISSSLDGSLKVVCGGHVNSTLQNERDEIGKSSGKGLIGQLKKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGMKELKGLEKKAIASGASKLVVKDLKEEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVANEVGADAVSHGCTGKGNDQVRFELAFFALNPNLKVVAPWREWDITGRQDAIEYAKKHNIPIPVTNESIYSRDANLWHLSHEGDVLEDPTNEPKKDMYMISTDPEDAPNEPEYVEIGIEGGLPVSINGEVLSPASLISKANHIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFAAVRELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMKKITETTTGSVSLKLYKGSVQVAGRRSLYSLYREDISSFENGQIYNQADAAGFIRLYGLPTRVRAMLNKRL 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3071884 3082223 - PI0023703.1 Cmetu12g1017 372353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1017 636 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 239 403 - -
Cmetu12g1017 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515
Cmetu12g1017 636 PANTHER ARGININOSUCCINATE SYNTHASE 237 634 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cmetu12g1017 636 FunFam Argininosuccinate synthase 235 411 - -
Cmetu12g1017 636 Gene3D - 4 231 IPR015943 GO:0005515
Cmetu12g1017 636 Gene3D Single helix bin 610 635 - -
Cmetu12g1017 636 CDD Argininosuccinate_Synthase 241 625 IPR023434 GO:0004055
Cmetu12g1017 636 ProSitePatterns Argininosuccinate synthase signature 1. 244 252 IPR018223 GO:0004055|GO:0005524|GO:0006526
Cmetu12g1017 636 SMART WD40_4 80 115 IPR001680 GO:0005515
Cmetu12g1017 636 SMART WD40_4 170 211 IPR001680 GO:0005515
Cmetu12g1017 636 SMART WD40_4 118 157 IPR001680 GO:0005515
Cmetu12g1017 636 FunFam Argininosuccinate synthase 412 635 - -
Cmetu12g1017 636 NCBIfam argininosuccinate synthase 240 630 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cmetu12g1017 636 Gene3D Argininosuccinate synthetase, chain A, domain 2 300 590 IPR024074 GO:0004055
Cmetu12g1017 636 Hamap Argininosuccinate synthase [argG]. 238 634 IPR023434 GO:0004055
Cmetu12g1017 636 ProSitePatterns Argininosuccinate synthase signature 2. 353 364 IPR018223 GO:0004055|GO:0005524|GO:0006526
Cmetu12g1017 636 Pfam WD domain, G-beta repeat 120 157 IPR001680 GO:0005515
Cmetu12g1017 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
Cmetu12g1017 636 Pfam Arginosuccinate synthase 242 628 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cmetu12g1017 636 SUPERFAMILY WD40 repeat-like 10 209 IPR036322 GO:0005515
Cmetu12g1017 636 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 408 634 IPR024074 GO:0004055
Cmetu12g1017 636 Gene3D HUPs 240 409 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1017 K01940 - - csv:101212271 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu12g1017 Cmetu-Chr12:3071884 Cmetu12g1038 Cmetu-Chr12:3081893 1.70E-217 tandem
Cmetu05g1175 Cmetu-Chr5:4226238 Cmetu12g1017 Cmetu-Chr12:3071884 2.40E-37 transposed
Cmetu07g1918 Cmetu-Chr7:22548390 Cmetu12g1017 Cmetu-Chr12:3071884 2.00E-39 transposed
Cmetu12g1017 Cmetu-Chr12:3071884 Cmetu02g0759 Cmetu-Chr2:24858318 1.20E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g140 . . . . . . . Bma12g01077 Cmo13g00830 Cmo18g00206 . Cma11g00044 Car10g00059 Car11g00039 Sed08g2445 Cpe20g00313 Cpe04g01606 Bhi02g00535 Tan09g2357 Cmetu12g1017 . Hepe09g0059 . . Cla06g01732 Cam06g1923 Cec06g1973 Cco06g1977 Clacu06g1879 Cmu06g1821 Cre06g2636 Cone2ag0966 Cone16ag0026 . . Lsi02g00491 Csa01g00954 Chy12g01178 Cme12g01598 . Blo15g00214 . . . . . . . Cmo10g00068 Cmo11g00044 Cma13g00797 . Car13g00646 Car18g00222 Cpe09g00969 . . . . . . . . . . . . . . . Lsi06g01632 Csa01g00067 Chy02g02653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76