Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1033 ATGAACCGCACATTCAATTCATACCCAGATGAAAATTATGCGAATGTTAGGAGATCCATGAGGCAGACTGAGGATGATTATCACAAGAACCTATCGGACAAGGATCCGCACTGTGATTTCAAGAGCAACCATGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATTTTTTCGGTCTCAGTGGTTTTTAGAGATCCACCATCGGATGCTGTAATTGAAAGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCAAACAGTTATACAGCCTGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGCGGTTGGTTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCATCTTCTTACTTAATCTCCAAATTGCGGGCTTATGAAGATCTTCATAAGCGATGTGGAGTTTATACTGAATCTTACAACAAAACTTTGGAGCAGCTTAGGTCTAATGGTAGTAGCAGCTCCTCAGACTGTAAATATCTTCTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTTGCTTCGGCGTTTCTTTATGCTCTCCTCACAAATCGCGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAAATTTCCCATTAAAAGATGACTTCAGTAACTTCAACCAGAACTCTCCTAATTGCTATGGTAAAATAATGAAGAATAACATGACGCCAGATTCAAGTGGAATGATCTTGCCATCTGTTGTTTATCTTCATTTGGTCCATGATTATGATGATGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAAGCTCCTTGGCTTGTTATGAAAACAGACAATTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTCGAGAAAGAACTTAATGATCTTTTTCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTCCACCCTGTGAATTCGGTTTGGGGACTGATTACGAGATATTATCACGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGAACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGCACCCTGAAAGAGAATCTGTTGCCACAAACCGAGAGGCAAACGAATGCCATCGATCCAGTTAGTAATCAAAAGTCAAAGGCCGTGCTGATAACTTCCTTGAGCGCTGGTTACTTTGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACAGTAACGGGGGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACTGAAAAAAGTATACACAACCAGAAGGCATTGGCCGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTTGGATACGTGGCTCAAGGTCTTGGTGGTCTGAAGCCATGGATATTGTACAAACCCGAAAATCGTACTGCACCAGATCCACCTTGCCGTCGAGCCATGTCTATGGAGCCTTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGTGAGGACATGACCTGGGGACTTAAGTTGGTTGATGATCCATATGATTGA 1761 41.96 MNRTFNSYPDENYANVRRSMRQTEDDYHKNLSDKDPHCDFKSNHELKCGFSSIRVMGMFVVLMMFISVIFSVSVVFRDPPSDAVIESSDVWIPQWNSDPVDSKVGDLQTVIQPVDKLLSGLLSAKHAVGSCLSRYNSVAYQHKLAYEPSSYLISKLRAYEDLHKRCGVYTESYNKTLEQLRSNGSSSSSDCKYLLWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQNFPLKDDFSNFNQNSPNCYGKIMKNNMTPDSSGMILPSVVYLHLVHDYDDDDKLFFCDQDQALLQQAPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYHAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNAIDPVSNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMTWGLKLVDDPYD 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 544610 547756 - PI0012436.1 Cmetu12g1033 372369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1033 586 PANTHER FUCOSYLTRANSFERASE 2-RELATED 59 582 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmetu12g1033 586 Pfam Xyloglucan fucosyltransferase 104 554 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmetu12g1033 586 FunFam Galactoside 2-alpha-L-fucosyltransferase 189 240 - -
Cmetu12g1033 586 Gene3D - 188 242 - -
Cmetu12g1033 586 Gene3D - 369 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1033 K13681 - - csv:101219153 1127.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1718 Cmetu-Chr7:6329218 Cmetu12g1033 Cmetu-Chr12:544610 5.40E-140 dispersed
Cmetu10g1047 Cmetu-Chr10:19493765 Cmetu12g1033 Cmetu-Chr12:544610 4.00E-197 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1047 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.1 6.7e-154 541.2
Cmetu12g1033 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 1.4e-151 533.5
Cmetu10g1047 . 101 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 9.8e-163 570.5
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 6.0e-160 561.2
Cmetu10g1047 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 1.7e-137 486.5
Cmetu12g1033 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 7.5e-133 471.1
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 9.7e-187 650.2
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT1G49710 72.2 2.9e-138 489.2
Cmetu03g2230 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.5 3.9e-167 584.7
Cmetu10g1047 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 7.2e-183 637.5
Cmetu12g1033 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.1 5.0e-168 588.2
Cmetu10g1047 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 2.2e-200 695.7
Cmetu12g1033 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.6 1.9e-188 656.0
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 1.9e-153 539.7
Cmetu12g1033 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.4 1.4e-145 513.5
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 2.7e-147 519.2
Cmetu12g1033 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 8.4e-141 497.7
Cmetu10g1047 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.4 2.4e-148 522.7
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 1.3e-144 510.4
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT3G19280 61.7 5.2e-185 644.4
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT3G19280 74.0 1.2e-141 500.4
Cmetu10g1047 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 7.2e-183 637.5
Cmetu12g1033 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.1 5.0e-168 588.2
Cmetu10g1047 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 2.2e-200 695.7
Cmetu12g1033 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.6 1.9e-188 656.0
Cmetu10g1047 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 7.2e-183 637.5
Cmetu12g1033 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.1 5.0e-168 588.2
Cmetu10g1047 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.4 2.4e-148 522.7
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 1.3e-144 510.4
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 2.7e-147 519.2
Cmetu12g1033 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 8.4e-141 497.7
Cmetu10g1047 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.1 6.7e-154 541.2
Cmetu12g1033 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 1.4e-151 533.5
Cmetu10g1047 . 101 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 9.8e-163 570.5
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 6.0e-160 561.2
Cmetu10g1047 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 1.7e-137 486.5
Cmetu12g1033 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 7.5e-133 471.1
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 1.9e-153 539.7
Cmetu12g1033 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.4 1.4e-145 513.5
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT3G19280 61.7 5.2e-185 644.4
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT3G19280 74.0 1.2e-141 500.4
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 9.7e-187 650.2
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT1G49710 72.2 2.9e-138 489.2
Cmetu03g2230 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.5 3.9e-167 584.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29