Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1057 ATGGATTCCCATACCAGAAGGTCGAAGATGAACGGAACCGAAAAATACGATGGCCGAGACGGCAAGGCGGTCGCTAGAAGGAGGCCGCTGACGATGACGGAGATTTTAACATCAACAAGTTCTACACTCGCGACGATCATGTTCGCCTGGTCGATCATCCGTCAGTACTGTCCTCACGGACTCCGCCAATATCTCCAGACATATTTTGGTAAGTTCATTGATTACATCTATCCTAATCCGTACGTTCGAATCGCAATCTACGAATTTGCTGGCGAACGTCTCAGTCGGAACAAAGCCTTCGCAGCGGTTGAAGCGTATCTGAGCAATAAACTTTCAGACGACGCCAAAAGACTCAAAGCTGAGGTCGGTGAATCCAAGAACAACTTCTCATTGAGTATGGATGAGTACGAAAGAGTTACCGATGAGTATGAAAACGCTGAGTTCTGGTGGACTTTGAGCAAAATCGCCGGATCAGCAAAGAAATCCACCTCGTTATATCCAGAACCCGATCGAAGATTCTATCAGCTTAAATTTCACAAGAAGCATCGAGAACTTGTAAAAGAATCGTACCTGAAGCATGTATTGAAGGAAGGGAAAGAAATCAGAGTGAATCGGAGGCGGAGGAAGCTTTACACTAACGGAACAGGAAATCGATGGCCAATTCACCGGCAATCGACGATGTGGAGCGAAGTTTACTTCGAACATCCTGCAAGTTTTGACACAATCGGCATGGATCCAGAGAAAAAGCAAGAGATTATAGAAGATTTACTAACATTTAGCCAGAGTAAAGAGTATTACGCTCGAATCGGCAAGGCGTGGAAACGAGGTTACCTTCTGTACGGTCCGCCGGGGACGGGGAAATCAACGACGATCGCCGCCATGGCGAATTTGCTAAACTACGACGTTTACGATTTGGAATTAACAGCAGTGAAGGACAATACAGAGCTTCGGAAGCTTCTAATTGAGACGACGAGCAAATCGATAATCGTGATTGAAGATATCGATTGTTCATTAGAACTCACAGGGCAAAGGAAAATCAAGAAAGAAGGAAGCTCAAATGAGGAGAAAGAGAAGGAGAAAGCAATTAAGGAACTGAAGAAAGAAGAAGAAGAAGTGAAAAGCAAAGTAACTCTGTCTGGATTGTTGAATTTCATCGACGGAATTTGGTCGGCTTGCGGCGGAGAGAGGCTGATCGTTTTCACAACAAATCACTTGGAGAAGCTTGATCCGGCATTAATCCGTAGAGGTAGAATGGACAAACACATTGAGCTTTCTTATTGTAGCTATGAAGCTTTCAAAGTGTTGGCTAAGAACTACTTGAATGTTGAAACACATGAGCTTTTTGAAGAGATTAAAGAGCTTTTCAACAATGTAAAAATGACGCCGGCGGATGTCGCTGAGAATCTCATGCCGAAATCACGGCAAGAAGCGGCGGAGCATTCACTTCGTAGGTTAATTGGAAGCTTGGAAGAAACGAAGAGAGTAGCGGAGGAGAAGAAGAAAAGAAAGGAAGACAAATCAAAGGAGTCGTCGCCTTCAAAGATAGTCAACAAAAAAGAGTCACCTTCAGAAACAGTCAATGAAGAAGAGTCGTGTTCAAAGATAGTCAACGAGAAGGGGTCGTCTTTAGAGTGA 1635 44.16 MDSHTRRSKMNGTEKYDGRDGKAVARRRPLTMTEILTSTSSTLATIMFAWSIIRQYCPHGLRQYLQTYFGKFIDYIYPNPYVRIAIYEFAGERLSRNKAFAAVEAYLSNKLSDDAKRLKAEVGESKNNFSLSMDEYERVTDEYENAEFWWTLSKIAGSAKKSTSLYPEPDRRFYQLKFHKKHRELVKESYLKHVLKEGKEIRVNRRRRKLYTNGTGNRWPIHRQSTMWSEVYFEHPASFDTIGMDPEKKQEIIEDLLTFSQSKEYYARIGKAWKRGYLLYGPPGTGKSTTIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLELTGQRKIKKEGSSNEEKEKEKAIKELKKEEEEVKSKVTLSGLLNFIDGIWSACGGERLIVFTTNHLEKLDPALIRRGRMDKHIELSYCSYEAFKVLAKNYLNVETHELFEEIKELFNNVKMTPADVAENLMPKSRQEAAEHSLRRLIGSLEETKRVAEEKKKRKEDKSKESSPSKIVNKKESPSETVNEEESCSKIVNEKGSSLE 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2174912 2177061 - PI0006209.1 Cmetu12g1057 372393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1057 544 Pfam ATPase family associated with various cellular activities (AAA) 278 425 IPR003959 GO:0005524|GO:0016887
Cmetu12g1057 544 Gene3D - 423 497 - -
Cmetu12g1057 544 Coils Coil 482 509 - -
Cmetu12g1057 544 FunFam AAA-ATPase ASD, mitochondrial 229 422 - -
Cmetu12g1057 544 Coils Coil 108 128 - -
Cmetu12g1057 544 SMART AAA_5 273 428 IPR003593 GO:0016887
Cmetu12g1057 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 475 IPR027417 -
Cmetu12g1057 544 MobiDBLite consensus disorder prediction 493 535 - -
Cmetu12g1057 544 ProSitePatterns AAA-protein family signature. 396 415 IPR003960 GO:0005524|GO:0016887
Cmetu12g1057 544 PANTHER BCS1 AAA-TYPE ATPASE 38 501 - -
Cmetu12g1057 544 Gene3D - 229 422 IPR027417 -
Cmetu12g1057 544 MobiDBLite consensus disorder prediction 493 544 - -
Cmetu12g1057 544 Pfam Domain associated at C-terminal with AAA 58 153 IPR025753 -
Cmetu12g1057 544 Coils Coil 348 378 - -
Cmetu12g1057 544 MobiDBLite consensus disorder prediction 1 23 - -
Cmetu12g1057 544 CDD RecA-like_BCS1 252 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1581 Cmetu-Chr8:21830771 Cmetu12g1057 Cmetu-Chr12:2174912 1.60E-93 dispersed
Cmetu08g1706 Cmetu-Chr8:21847542 Cmetu12g1057 Cmetu-Chr12:2174912 1.40E-66 dispersed
Cmetu10g0910 Cmetu-Chr10:17839898 Cmetu12g1057 Cmetu-Chr12:2174912 4.40E-29 dispersed
Cmetu12g0417 Cmetu-Chr12:2185833 Cmetu12g1057 Cmetu-Chr12:2174912 1.40E-164 dispersed
Cmetu12g1057 Cmetu-Chr12:2174912 Cmetu12g1726 Cmetu-Chr12:2190581 4.50E-57 dispersed
Cmetu12g1057 Cmetu-Chr12:2174912 Cmetu12g1668 Cmetu-Chr12:2180129 1.50E-137 tandem
Cmetu12g1057 Cmetu-Chr12:2174912 Cmetu09g0032 Cmetu-Chr9:19498514 1.60E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013815 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 2 1 0 25