Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1147 ATGGATGAAGCTCAGGGTGGCGGCTTGACTTCGCTGCCTCCATTTTTAGTCAAAACGTATGATATGGTTGATGACCCTTCAACCAATTCGATTGTTTCATGGAGTTCTAGTGATAAAAGCTTTGTTGTTTGGAATCCGCTGGAGTTCTCATCAGTTTTGTTGCCTAAATTCTTTAAGCATAGCAACTTCTCAAGCTTCATCAGGCAGCTCAATACTTATGGGTTCAGAAAGGTGGATCCTGAACAATGGGAATTTGCCAATGAGGATTTTGTTAGAGGTAAGCCACATCTGATGAAGAACATCCACAGGAGAAAACCAATCCATAGTCATTCTTTACAGAACCTTCATGGTCAAGGAATTTCTCCTCTAACTGAAGTGGAAAGAAACAGTTTTAAGGATGACATCGAAAGGCTGAAACTGGATAAAGAACAGCTTCTTCTCGAGTTGCAAAAATACGAACAAGAATATCAAGGAGTTGGATTGCAAATGCAAAATTTGAAAGACCGATTTCAACGTGTTCAACAGGAGATGCAATTATTTATCGGTTTGATGGCTCGCCTTTTGCAGAAACCAGGACTTCACTTGGATCTCCTGCCACAATGGGAAACTCCTGAGAGAAGGAGGAGATTACCTAGAGTTTCTTACAACATTAGTGAAGACAGCCTTGAGGACAATCAGATGGGGACAACTCAAACCATTGGTAGAGAAGATATGAGTTGTAGTTTTGATCCAATTTTGGAAAAAGAGCAGTTAGAACTTCTTGAGACATCTCTGACCTTTTGGGAAGGAATTATCCATAGTTATGATCAAACAGTTAGTCCACTTGATTCAAGCTCAAACGTGGAGTTGGTTGGATCTGTGAGTCATGCCAGTAGCCCTGCTATATCTTGCAGACTAGTTAGGGAGGAATTTCGGTGTAAATCACCTGGAATCGACATGAATTTGAAGCCCATGGCTACCGTTGCTCCCAACTCTGTAGCTTCAAAAGATCAAGCAGCTGGAGTAAATGCTCCATTACCAACTGGATTCAATGATGTTTTCTGGCAGCAATTCTTGACAGAGAATCCTGGTGCATCTGATCCACAAGAAGTTCAATCGGCCAGAAAAGATTCAGATGTCATAAACGAAGAAAACAGACAGAGTGATCACGGAAAATTTTGGTGGAACACGAGGAGTGTAAATAATGTCGTAGAACAGATAGGGCACCTTAAACCAGCTGAGAAATTTTGA 1230 41.22 MDEAQGGGLTSLPPFLVKTYDMVDDPSTNSIVSWSSSDKSFVVWNPLEFSSVLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGKPHLMKNIHRRKPIHSHSLQNLHGQGISPLTEVERNSFKDDIERLKLDKEQLLLELQKYEQEYQGVGLQMQNLKDRFQRVQQEMQLFIGLMARLLQKPGLHLDLLPQWETPERRRRLPRVSYNISEDSLEDNQMGTTQTIGREDMSCSFDPILEKEQLELLETSLTFWEGIIHSYDQTVSPLDSSSNVELVGSVSHASSPAISCRLVREEFRCKSPGIDMNLKPMATVAPNSVASKDQAAGVNAPLPTGFNDVFWQQFLTENPGASDPQEVQSARKDSDVINEENRQSDHGKFWWNTRSVNNVVEQIGHLKPAEKF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5811381 5815475 - PI0012153.1 Cmetu12g1147 372483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1147 409 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu12g1147 409 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu12g1147 409 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 231 IPR027725 -
Cmetu12g1147 409 FunFam Heat shock transcription factor 1 8 105 - -
Cmetu12g1147 409 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
Cmetu12g1147 409 MobiDBLite consensus disorder prediction 365 380 - -
Cmetu12g1147 409 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu12g1147 409 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu12g1147 409 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu12g1147 409 Gene3D - 9 105 IPR036388 -
Cmetu12g1147 409 Coils Coil 128 169 - -
Cmetu12g1147 409 MobiDBLite consensus disorder prediction 354 380 - -
Cmetu12g1147 409 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1147 K09419 - - csv:101204390 789.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1332 Cmetu-Chr10:1504834 Cmetu12g1147 Cmetu-Chr12:5811381 2.90E-35 dispersed
Cmetu11g1527 Cmetu-Chr11:9766184 Cmetu12g1147 Cmetu-Chr12:5811381 2.00E-46 dispersed
Cmetu06g1519 Cmetu-Chr6:2413703 Cmetu12g1147 Cmetu-Chr12:5811381 2.00E-50 transposed
Cmetu12g1147 Cmetu-Chr12:5811381 Cmetu04g0856 Cmetu-Chr4:1518903 1.60E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0897 . 34 234 HSF AT4G17750 60.1 2.7e-61 233.4
Cmetu03g1160 . 40 240 HSF AT4G17750 52.7 4.8e-58 222.6
Cmetu01g0604 . 121 327 HSF AT4G17750 55.3 5.3e-57 219.2
Cmetu04g1703 . 46 267 HSF AT4G17750 50.2 1.9e-54 210.7
Cmetu05g1296 . 60 252 HSF AT4G17750 50.2 9.4e-46 181.8
Cmetu11g1527 . 12 114 HSF AT4G17750 69.9 5.9e-40 162.5
Cmetu03g2201 . 20 118 HSF AT4G17750 71.7 6.6e-39 159.1
Cmetu07g0842 . 20 118 HSF AT4G17750 69.7 2.5e-38 157.1
Cmetu09g1249 . 20 115 HSF AT4G17750 69.8 1.8e-36 151.0
Cmetu06g0897 . 7 239 HSF AT5G16820 55.0 1.1e-59 228.0
Cmetu05g1161 . 41 246 HSF AT5G16820 55.1 1.5e-59 227.6
Cmetu01g0604 . 122 331 HSF AT5G16820 55.6 1.2e-56 218.0
Cmetu03g1160 . 41 240 HSF AT5G16820 52.6 2.2e-55 213.8
Cmetu11g1527 . 13 115 HSF AT5G16820 72.8 2.9e-39 160.2
Cmetu06g1701 . 13 514 HSF AT1G32330 53.8 3.5e-122 435.6
Cmetu06g0897 . 23 224 HSF AT1G32330 53.5 2.5e-59 226.9
Cmetu01g0604 . 110 327 HSF AT1G32330 51.8 8.0e-58 221.9
Cmetu05g1161 . 27 226 HSF AT1G32330 53.1 1.8e-57 220.7
Cmetu03g1160 . 29 221 HSF AT1G32330 53.7 4.9e-55 212.6
Cmetu12g1147 . 13 191 HSF AT1G32330 50.5 4.3e-43 172.9
Cmetu11g1527 . 11 118 HSF AT1G32330 67.9 4.4e-40 162.9
Cmetu03g2201 . 20 117 HSF AT1G32330 71.4 4.1e-38 156.4
Cmetu05g1161 . 41 245 HSF AT3G02990 55.0 5.8e-61 232.3
Cmetu06g0897 . 35 238 HSF AT3G02990 56.2 1.4e-59 227.6
Cmetu01g0604 . 122 339 HSF AT3G02990 53.6 5.4e-59 225.7
Cmetu03g1160 . 41 240 HSF AT3G02990 51.7 2.1e-55 213.8
Cmetu11g1527 . 13 106 HSF AT3G02990 74.5 3.6e-39 159.8
Cmetu06g0897 . 11 234 HSF AT2G26150 59.0 2.9e-70 262.7
Cmetu01g0604 . 110 326 HSF AT2G26150 55.0 1.1e-64 244.2
Cmetu06g1701 . 8 243 HSF AT2G26150 55.7 5.6e-61 231.9
Cmetu12g1147 . 5 155 HSF AT2G26150 53.3 3.7e-41 166.0
Cmetu11g1527 . 5 118 HSF AT2G26150 62.3 1.5e-37 154.1
Cmetu04g1703 . 30 272 HSF AT5G03720 57.1 1.1e-71 267.7
Cmetu11g1527 . 13 137 HSF AT4G18880 64.0 4.2e-44 176.0
Cmetu06g1519 . 3 460 HSF AT4G13980 51.6 1.2e-111 400.6
Cmetu11g1527 . 1 137 HSF AT4G13980 59.1 3.6e-39 159.8
Cmetu06g0897 . 23 215 HSF AT5G43840 54.4 1.1e-54 210.7
Cmetu06g0897 . 19 313 HSF AT3G22830 54.5 3.7e-88 322.4
Cmetu05g1161 . 29 345 HSF AT3G22830 51.4 3.1e-87 319.3
Cmetu03g1160 . 29 251 HSF AT3G22830 53.2 4.8e-64 242.3
Cmetu06g1701 . 29 242 HSF AT3G22830 58.9 9.1e-63 238.0
Cmetu05g1296 . 50 259 HSF AT3G22830 51.9 1.2e-51 201.1
Cmetu05g1161 . 26 320 HSF AT3G51910 54.2 9.4e-72 267.3
Cmetu03g1160 . 29 221 HSF AT3G51910 57.0 2.1e-55 213.0
Cmetu05g1161 . 27 334 HSF AT3G63350 50.2 5.9e-69 258.1
Cmetu06g0897 . 13 224 HSF AT3G63350 52.1 2.4e-54 209.5
Cmetu03g1160 . 29 228 HSF AT3G63350 53.2 8.6e-52 201.1
Cmetu11g1527 . 5 139 HSF AT3G63350 56.9 2.1e-37 153.3
Cmetu09g1249 . 16 336 HSF AT4G11660 54.1 2.0e-80 296.6
Cmetu07g0842 . 16 119 HSF AT4G11660 74.0 1.4e-44 177.6
Cmetu03g2201 . 16 121 HSF AT4G11660 71.7 1.8e-44 177.2
Cmetu04g0111 . 21 117 HSF AT4G11660 72.2 2.1e-37 153.7
Cmetu06g1701 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cmetu08g1024 . 37 215 HSF AT2G41690 57.0 3.6e-46 182.2
Cmetu03g2201 . 19 374 HSF AT1G46264 52.0 4.1e-88 322.0
Cmetu07g0842 . 19 326 HSF AT1G46264 55.2 6.8e-83 304.7
Cmetu02g0293 . 18 192 HSF AT1G46264 51.4 2.1e-44 176.8
Cmetu06g1701 . 33 138 HSF AT1G46264 73.6 3.8e-41 166.0
Cmetu11g1527 . 5 105 HSF AT1G46264 68.3 9.6e-37 151.4
Cmetu06g0897 . 34 234 HSF AT4G17750 60.1 2.7e-61 233.4
Cmetu03g1160 . 40 240 HSF AT4G17750 52.7 4.8e-58 222.6
Cmetu01g0604 . 121 327 HSF AT4G17750 55.3 5.3e-57 219.2
Cmetu04g1703 . 46 267 HSF AT4G17750 50.2 1.9e-54 210.7
Cmetu05g1296 . 60 252 HSF AT4G17750 50.2 9.4e-46 181.8
Cmetu11g1527 . 12 114 HSF AT4G17750 69.9 5.9e-40 162.5
Cmetu03g2201 . 20 118 HSF AT4G17750 71.7 6.6e-39 159.1
Cmetu07g0842 . 20 118 HSF AT4G17750 69.7 2.5e-38 157.1
Cmetu09g1249 . 20 115 HSF AT4G17750 69.8 1.8e-36 151.0
Cmetu06g0897 . 7 239 HSF AT5G16820 55.0 1.1e-59 228.0
Cmetu05g1161 . 41 246 HSF AT5G16820 55.1 1.5e-59 227.6
Cmetu01g0604 . 122 331 HSF AT5G16820 55.6 1.2e-56 218.0
Cmetu03g1160 . 41 240 HSF AT5G16820 52.6 2.2e-55 213.8
Cmetu11g1527 . 13 115 HSF AT5G16820 72.8 2.9e-39 160.2
Cmetu06g1701 . 13 514 HSF AT1G32330 53.8 3.5e-122 435.6
Cmetu06g0897 . 23 224 HSF AT1G32330 53.5 2.5e-59 226.9
Cmetu01g0604 . 110 327 HSF AT1G32330 51.8 8.0e-58 221.9
Cmetu05g1161 . 27 226 HSF AT1G32330 53.1 1.8e-57 220.7
Cmetu03g1160 . 29 221 HSF AT1G32330 53.7 4.9e-55 212.6
Cmetu12g1147 . 13 191 HSF AT1G32330 50.5 4.3e-43 172.9
Cmetu11g1527 . 11 118 HSF AT1G32330 67.9 4.4e-40 162.9
Cmetu03g2201 . 20 117 HSF AT1G32330 71.4 4.1e-38 156.4
Cmetu05g1161 . 41 245 HSF AT3G02990 55.0 5.8e-61 232.3
Cmetu06g0897 . 35 238 HSF AT3G02990 56.2 1.4e-59 227.6
Cmetu01g0604 . 122 339 HSF AT3G02990 53.6 5.4e-59 225.7
Cmetu03g1160 . 41 240 HSF AT3G02990 51.7 2.1e-55 213.8
Cmetu11g1527 . 13 106 HSF AT3G02990 74.5 3.6e-39 159.8
Cmetu06g0897 . 11 234 HSF AT2G26150 59.0 2.9e-70 262.7
Cmetu01g0604 . 110 326 HSF AT2G26150 55.0 1.1e-64 244.2
Cmetu06g1701 . 8 243 HSF AT2G26150 55.7 5.6e-61 231.9
Cmetu12g1147 . 5 155 HSF AT2G26150 53.3 3.7e-41 166.0
Cmetu11g1527 . 5 118 HSF AT2G26150 62.3 1.5e-37 154.1
Cmetu04g1703 . 30 272 HSF AT5G03720 57.1 1.1e-71 267.7
Cmetu11g1527 . 13 137 HSF AT4G18880 64.0 4.2e-44 176.0
Cmetu06g1519 . 3 460 HSF AT4G13980 51.6 1.2e-111 400.6
Cmetu11g1527 . 1 137 HSF AT4G13980 59.1 3.6e-39 159.8
Cmetu06g0897 . 23 215 HSF AT5G43840 54.4 1.1e-54 210.7
Cmetu06g0897 . 19 313 HSF AT3G22830 54.5 3.7e-88 322.4
Cmetu05g1161 . 29 345 HSF AT3G22830 51.4 3.1e-87 319.3
Cmetu03g1160 . 29 251 HSF AT3G22830 53.2 4.8e-64 242.3
Cmetu06g1701 . 29 242 HSF AT3G22830 58.9 9.1e-63 238.0
Cmetu05g1296 . 50 259 HSF AT3G22830 51.9 1.2e-51 201.1
Cmetu05g1161 . 26 320 HSF AT3G51910 54.2 9.4e-72 267.3
Cmetu03g1160 . 29 221 HSF AT3G51910 57.0 2.1e-55 213.0
Cmetu05g1161 . 27 334 HSF AT3G63350 50.2 5.9e-69 258.1
Cmetu06g0897 . 13 224 HSF AT3G63350 52.1 2.4e-54 209.5
Cmetu03g1160 . 29 228 HSF AT3G63350 53.2 8.6e-52 201.1
Cmetu11g1527 . 5 139 HSF AT3G63350 56.9 2.1e-37 153.3
Cmetu09g1249 . 16 336 HSF AT4G11660 54.1 2.0e-80 296.6
Cmetu07g0842 . 16 119 HSF AT4G11660 74.0 1.4e-44 177.6
Cmetu03g2201 . 16 121 HSF AT4G11660 71.7 1.8e-44 177.2
Cmetu04g0111 . 21 117 HSF AT4G11660 72.2 2.1e-37 153.7
Cmetu06g1701 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cmetu08g1024 . 37 215 HSF AT2G41690 57.0 3.6e-46 182.2
Cmetu03g2201 . 19 374 HSF AT1G46264 52.0 4.1e-88 322.0
Cmetu07g0842 . 19 326 HSF AT1G46264 55.2 6.8e-83 304.7
Cmetu02g0293 . 18 192 HSF AT1G46264 51.4 2.1e-44 176.8
Cmetu06g1701 . 33 138 HSF AT1G46264 73.6 3.8e-41 166.0
Cmetu11g1527 . 5 105 HSF AT1G46264 68.3 9.6e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8922 PF00447 HSF_DNA-bind 4.20E-31 CL0123 Cmetu TF