Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1244 ATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACATCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTTCATTCGATTGGGCTTGACGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTCTGGAAAGCGTCGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAGGGATTGAGGGAGAATTGCAGTGCATCTGATGGAAACGATTATGCGAAAGTCTCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGAAGCCAGACCTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGTTAAAAGCTGTATCTGCAGACAATAGAAGGGAGAAGTCATTGGCGCTCCTGACCCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAGGTAAGGCGGCTATATGACATTGCCAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACTCATACAACGGACACGAGAAAGCCTGCATTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCAACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAGTTCTGCCTATCAGGGTTTTAATCATTGCCTCAATGTGCAAAAGCTAGTGCAGTGCGAGAATTCTTCACAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAAAGAACTTCCAAGAGCTATCAATTTGGACCCTTCGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTTGGACAATAACAATGTGAAGCGGACTCACGACTGGGAAAGCCTTTCCTCAACATTCCGTCCCCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATTTCTTGA 1155 43.2 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKAVSADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAESSAYQGFNHCLNVQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2268870 2272596 + PI0021140.2 Cmetu12g1244 372580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1244 384 FunFam E2F transcription factor-like E2FE 153 240 - -
Cmetu12g1244 384 MobiDBLite consensus disorder prediction 131 153 - -
Cmetu12g1244 384 Gene3D - 18 91 IPR036388 -
Cmetu12g1244 384 Gene3D - 153 240 IPR036388 -
Cmetu12g1244 384 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Cmetu12g1244 384 Pfam E2F/DP family winged-helix DNA-binding domain 160 238 IPR003316 GO:0005667|GO:0006355
Cmetu12g1244 384 PANTHER TRANSCRIPTION FACTOR E2F 13 353 IPR015633 GO:0000978|GO:0006357
Cmetu12g1244 384 FunFam E2F transcription factor 8 18 90 - -
Cmetu12g1244 384 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Cmetu12g1244 384 SMART E2F_TDP_2 158 238 IPR003316 GO:0005667|GO:0006355
Cmetu12g1244 384 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Cmetu12g1244 384 MobiDBLite consensus disorder prediction 106 153 - -
Cmetu12g1244 384 SUPERFAMILY Winged helix DNA-binding domain 160 239 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1244 K09391 - - csv:101219210 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g1984 Cmetu-Chr8:17838097 Cmetu12g1244 Cmetu-Chr12:2268870 1.90E-06 transposed
Cmetu05g1511 Cmetu-Chr5:21381479 Cmetu12g1244 Cmetu-Chr12:2268870 2.00E-09 transposed
Cmetu12g1244 Cmetu-Chr12:2268870 Cmetu02g0961 Cmetu-Chr2:24031801 2.80E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8928 PF02319 E2F_TDP 2.30E-20 CL0123 Cmetu TF