Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1305 ATGGAGTCTTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCATCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTACCTGATGATTCTGTCAGTGATGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTGCCCACCTCTCATCCACTTCATGGAGAAGAAGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCAACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATAGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTGGCAGGCCATAATGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGAGACAGCCGATTTCAGGAGAAAACGTTGACTGCAACCTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTATAAAAGTTGAGGGAAAGAGTGATTATAACTCTATATCTGCAACTTCACTGAGCAACAGGCATCTGAATGTGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAAGAAAATGGAACTAGTACAGCACCTACAGTAAACATGTTAAGTGAGACAACTTGCCAATATTCACATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCAAACTACCTTATCGAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCGAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCGTCATGTCCGAGAGTCAATCGAATTATAGCATGAGCGAACTCTCCGAAAAGCTCATGGGAGTGAGCTCACAGGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCCATACCGATGTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGGGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTTTCATCACAACTCCAGCGAGTGGAACATCAGAGGCACTCCATGCAGGTAAATAAATAA 1647 42.26 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKTDGGRNLNLVLPTSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKSDYNSISATSLSNRHLNVKSPLLPYDFEVQIPPFQENGTSTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHQTTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFVMSESQSNYSMSELSEKLMGVSSQASSTGITSKFASGMSEAQMGPIPMCESSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQVNK 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 882778 889984 - PI0005263.8 Cmetu12g1305 372641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1305 548 Pfam SBP domain 177 250 IPR004333 GO:0003677
Cmetu12g1305 548 MobiDBLite consensus disorder prediction 146 165 - -
Cmetu12g1305 548 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Cmetu12g1305 548 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Cmetu12g1305 548 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Cmetu12g1305 548 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 542 IPR044817 GO:0003677
Cmetu12g1305 548 MobiDBLite consensus disorder prediction 147 165 - -
Cmetu12g1305 548 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu12g1305 548 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1305 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g2111 Cmetu-Chr7:21930700 Cmetu12g1305 Cmetu-Chr12:882778 2.60E-26 dispersed
Cmetu11g0001 Cmetu-Chr11:2610523 Cmetu12g1305 Cmetu-Chr12:882778 3.40E-27 dispersed
Cmetu11g0895 Cmetu-Chr11:1745057 Cmetu12g1305 Cmetu-Chr12:882778 1.10E-30 dispersed
Cmetu12g1278 Cmetu-Chr12:3197951 Cmetu12g1305 Cmetu-Chr12:882778 4.30E-31 dispersed
Cmetu12g1305 Cmetu-Chr12:882778 Cmetu12g1598 Cmetu-Chr12:5236573 3.70E-27 dispersed
Cmetu04g2409 Cmetu-Chr4:14064083 Cmetu12g1305 Cmetu-Chr12:882778 7.40E-29 transposed
Cmetu12g1305 Cmetu-Chr12:882778 Cmetu02g0367 Cmetu-Chr2:23224297 7.70E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2409 . 181 1013 SBP-box Gene Family AT2G47070 55.5 2.9e-240 828.6
Cmetu04g2409 . 25 1013 SBP-box Gene Family AT3G60030 54.0 6.3e-277 950.7
Cmetu07g0660 . 1 1003 SBP-box Gene Family AT1G20980 50.3 1.9e-261 899.4
Cmetu07g0660 . 1 677 SBP-box Gene Family AT1G76580 50.9 9.9e-166 580.9
Cmetu12g1305 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.0e-41 167.2
Cmetu04g2409 . 181 1013 SBP-box Gene Family AT2G47070 55.5 2.9e-240 828.6
Cmetu12g1305 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.0e-41 167.2
Cmetu04g2409 . 25 1013 SBP-box Gene Family AT3G60030 54.0 6.3e-277 950.7
Cmetu07g0660 . 1 1003 SBP-box Gene Family AT1G20980 50.3 1.9e-261 899.4
Cmetu07g0660 . 1 677 SBP-box Gene Family AT1G76580 50.9 9.9e-166 580.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8936 PF03110 SBP 3.00E-31 No_clan Cmetu TF