Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1371 ATGTCGTTCTCTATATCAATTTATTATCATTTTTTTAGGATTCCATCTTTTATGTTAATTCCAAAAGATTACCCTTTAGATATTCTAACGGCATTCGACTCGCTGGACCCGAATGGAAAAATCGAAATCAAATGGGATGTCATGTATTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTTTCAGACATACCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGGGAGAGGTCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCAGTTCCACGTTTACAGAAACTATACCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCATTCCGGTAGTTCAAATAAGACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTAGGTTACACATGTAGCCAGGCAAAGATTGTGCCGCCATCAGCTTTCTATTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACGCCAACCTGTTGTGTCTCCATGTCATCTTTCTATAACTCGAAAATTACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAACGACATGTATCCTGACCGAATCAGATCTTCAAAGCGTAACGGAATTGAATGCACCTACAAATGACAGTGCTCCATTGGTGCAGTGCACGACACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTTAAGATAACCATCAGTAATCTCAACTATCGACTTAACTATTCACAATGGACTCTTGTTGTGGAGCACCCCAATTTCAATAACACAGTGGAAGTTTATAGCTTTGTTTATAAGTCACTCACCCCCTTCATCTCTAAGAACGACACCGCTTTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATTATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGATGGGCTTTCCCTCAAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCTTTTCTACCCAACTTAGCTAATGCAAATCCAATTCTATTATCAATACTAGCTTGCATTTTTCTTCCCATATTCCTTACATTGTTATCTTAG 1341 41.46 MSFSISIYYHFFRIPSFMLIPKDYPLDILTAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNFQTYRHITSPGWTLGWVWAKGEVIWSMQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASETPTCCVSMSSFYNSKITPCKACACGCQDRTTCILTESDLQSVTELNAPTNDSAPLVQCTTHNCPIQVHWHVKENYKGYWRVKITISNLNYRLNYSQWTLVVEHPNFNNTVEVYSFVYKSLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVHSEIIFQKDSTFTLEQGWAFPQKVYFDGDECVMPFPDSYPFLPNLANANPILLSILACIFLPIFLTLLS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 873268 876250 - PI0001327.1 Cmetu12g1371 372707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1371 446 PIRSF COBRA 9 446 IPR006918 GO:0010215|GO:0016020
Cmetu12g1371 446 PANTHER PROTEIN COBRA 29 437 IPR006918 GO:0010215|GO:0016020
Cmetu12g1371 446 Pfam COBRA-like protein 55 220 IPR006918 GO:0010215|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g0296 Cmetu-Chr7:17544115 Cmetu12g1371 Cmetu-Chr12:873268 1.30E-155 dispersed
Cmetu12g1371 Cmetu-Chr12:873268 Cmetu02g0745 Cmetu-Chr2:23240357 8.20E-158 wgd
Cmetu12g1371 Cmetu-Chr12:873268 Cmetu07g1414 Cmetu-Chr7:17541837 3.70E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0745 . 48 447 COBRA Gene Family AT5G60920 81.0 1.3e-210 729.2
Cmetu07g0296 . 44 449 COBRA Gene Family AT5G60920 75.7 1.2e-198 689.5
Cmetu07g1414 . 31 423 COBRA Gene Family AT5G60920 68.0 7.8e-179 623.6
Cmetu02g1379 . 1 380 COBRA Gene Family AT5G60920 68.0 6.2e-168 587.4
Cmetu12g1371 . 43 442 COBRA Gene Family AT5G60920 61.2 7.3e-153 537.3
Cmetu06g2325 . 23 418 COBRA Gene Family AT5G60920 52.8 3.1e-127 452.2
Cmetu07g0296 . 14 452 COBRA Gene Family AT3G02210 74.0 3.1e-205 711.4
Cmetu02g0745 . 23 451 COBRA Gene Family AT3G02210 73.9 7.7e-204 706.8
Cmetu07g1414 . 5 415 COBRA Gene Family AT3G02210 67.5 3.3e-178 621.7
Cmetu02g1379 . 3 381 COBRA Gene Family AT3G02210 68.0 3.6e-161 565.1
Cmetu12g1371 . 31 428 COBRA Gene Family AT3G02210 61.8 9.6e-154 540.4
Cmetu06g2325 . 12 402 COBRA Gene Family AT3G02210 56.3 1.2e-135 480.3
Cmetu02g0745 . 21 446 COBRA Gene Family AT3G29810 74.2 4.6e-201 697.6
Cmetu07g0296 . 29 447 COBRA Gene Family AT3G29810 72.8 4.4e-196 681.0
Cmetu07g1414 . 14 410 COBRA Gene Family AT3G29810 67.8 1.1e-175 613.2
Cmetu02g1379 . 3 363 COBRA Gene Family AT3G29810 67.0 3.7e-158 555.1
Cmetu12g1371 . 31 445 COBRA Gene Family AT3G29810 58.2 1.1e-149 526.9
Cmetu06g2325 . 4 414 COBRA Gene Family AT3G29810 55.0 4.6e-137 485.0
Cmetu07g1414 . 9 339 COBRA Gene Family AT5G15630 81.6 7.4e-175 610.1
Cmetu02g1379 . 1 291 COBRA Gene Family AT5G15630 85.6 3.0e-160 561.6
Cmetu02g0745 . 31 361 COBRA Gene Family AT5G15630 73.5 4.4e-151 531.2
Cmetu07g0296 . 29 357 COBRA Gene Family AT5G15630 69.3 9.4e-146 513.5
Cmetu12g1371 . 30 349 COBRA Gene Family AT5G15630 63.4 2.9e-131 465.3
Cmetu02g0745 . 30 224 COBRA Gene Family AT5G60950 58.7 1.1e-64 243.4
Cmetu07g0296 . 27 220 COBRA Gene Family AT5G60950 60.0 7.1e-64 240.7
Cmetu07g1414 . 27 207 COBRA Gene Family AT5G60950 56.9 3.4e-58 221.9
Cmetu12g1371 . 39 221 COBRA Gene Family AT5G60950 51.9 3.5e-47 185.3
Cmetu02g1379 . 3 159 COBRA Gene Family AT5G60950 55.4 3.3e-45 178.7
Cmetu06g2325 . 10 405 COBRA Gene Family AT1G09790 60.1 4.5e-148 521.5
Cmetu07g0296 . 25 427 COBRA Gene Family AT1G09790 54.7 4.7e-137 485.0
Cmetu02g0745 . 32 432 COBRA Gene Family AT1G09790 53.6 4.5e-132 468.4
Cmetu07g1414 . 8 410 COBRA Gene Family AT1G09790 51.2 6.1e-129 458.0
Cmetu02g1379 . 1 362 COBRA Gene Family AT1G09790 53.7 1.9e-122 436.4
Cmetu06g2109 . 34 642 COBRA Gene Family AT4G16120 67.4 3.3e-256 881.3
Cmetu04g0125 . 49 669 COBRA Gene Family AT4G16120 51.6 9.9e-200 693.7
Cmetu06g0182 . 1 562 COBRA Gene Family AT4G16120 54.0 1.9e-190 662.9
Cmetu06g2109 . 12 634 COBRA Gene Family AT3G16860 63.4 4.6e-242 834.3
Cmetu04g0125 . 43 652 COBRA Gene Family AT3G16860 50.8 7.5e-192 667.5
Cmetu06g0182 . 1 567 COBRA Gene Family AT3G16860 52.9 1.2e-181 633.6
Cmetu06g2109 . 7 629 COBRA Gene Family AT5G49270 62.3 5.2e-241 830.9
Cmetu04g0125 . 53 649 COBRA Gene Family AT5G49270 51.3 2.6e-192 669.1
Cmetu06g0182 . 1 565 COBRA Gene Family AT5G49270 51.4 9.0e-185 644.0
Cmetu04g0125 . 10 669 COBRA Gene Family AT3G20580 60.2 9.6e-251 863.2
Cmetu06g0182 . 1 568 COBRA Gene Family AT3G20580 62.1 7.6e-224 773.9
Cmetu06g2109 . 27 626 COBRA Gene Family AT3G20580 54.6 5.1e-204 708.0
Cmetu04g0125 . 5 660 COBRA Gene Family AT4G27110 57.3 2.3e-228 788.9
Cmetu06g0182 . 1 568 COBRA Gene Family AT4G27110 63.4 1.1e-222 770.0
Cmetu06g2109 . 24 644 COBRA Gene Family AT4G27110 52.3 1.3e-199 693.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73