Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1391 ATGGCGGACGATTCAACTAACTCCTTCGCGTTCCCAGAAGATCGCTTAGAAGCCCTAATTTCTTGTCCTTCCGCGAGTGCCAAATCCGGTGCCGAAAACGAATTTCCTGAAGGTGGATTTGAAGAAAATCAGCTGCTGATTGACGATAATTCTTCTTCTATTTGTGTAATTTGCTTTTCGGATGATGGAAAAGCCGAGAGAGGCAAGCTTGATTCCTGTGACCATTATTTTTGCTTCGTCTGCATTATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGTAAGGGCAGGTTCACTGTTGTTCATAGAATTGCGAAGGATCCCTGTCGCCTCCGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGATCAGTCTGCTTCTGGAAATGCTAGGATTAGGGATCCATATGCAGAGACGTGTTGTACTGTGTGCAAGGGAATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTTTTGTGTCGGCCTTGGTGCTTATGTACCCGAAGGTGATTGGTTTTGCCATGACTGCACCATCTCCAGAGCTCAACATACTGATACTGAATTGGATACTAGTTTCAACGGTCAAAATCAAACAACTACAGTTGAACCACGCATTTCTATTTCTGATATAGTAAAAGAATCAAGTGCCCAAACAGTTGGCATAACTCGCAGAGGAGCTCTTTTACATTCAAATCGTGAGCCACCTTCTATTGTCCCCAGTTCGAGAAGCAGTGTGGCCCAGAAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACATTACATCGATGTCGCAACATCCATAGCTATATAAGGGCATTACGTGATAATTGGGGTGCTGTACGAAGGGGTTCACTGAACTTTCCTGCTAGCAGCTCATCCACATATTGTGGCAACAGTTCCAAACGAGATACTGGTGGTGCTGAACTAAACAAGCAAACAGATCAACCTCAAGCCATTAGCTTGCAGGCAACCGCATTACCTGAGTGTAATGGAAACTCTTATGATGTTGAGAAGGCATGGCGAATGATGGAAATTGCAAAGGAAAAGGCTATATGTGAAGGAGATCAAACCTTGAGACATCCTGTTCGTAGACAAATAACCACAAAAACAAAAGATTCTCACACAGCCGAAGGTCAACAGTACAAAATCAAGAAGCCGGATGAGCCAGCCAAGCATAAGAAGGAAATGGGAAAACAAAGATTGCTCGAGTTGGATAAGCAATTGTGTCGTCCCGCAGCAAGTAAGAAGAATAAAGCTTCTGATGAGTTTTTTCCTACCAATTCATCCAGTAATGGAGAATTTCCCTTGGGTAAAATGGTCCAGACTTGTGGAGGTGATTTCCACTATGAAAATAGAAGAAAGGCATCAAACAAAATAGTGGATGAAGTTTCATCATCCTCCACAATGACACAAGCCTCGGATAAACACCAACCTGCTCGTGAGGCTGGCAATGATCACGATGCCAAAAGTGAGATACGAACACTGGTCAAAATCAATCTAAAACTCCTAAGCCAAGACAAAAATTTGGGATATGAAAGGTACAAGGAAGTGGCAAGGCTAGCAACACACACAATCATGGCAAGATGTGGTTTAGAACCCCCACCAAAACCGACCAAACAATACTTATCGTGCTCGGTTTGCAGACACACAGAAGAAGAAATCCGGAAGCTTCACAGGTCGACTCTGATGCCGGATTCTTGCAGGGAATGCTTCATGGGGTTTGTGAAAGATGTTGTTAATGCCATTATGTTAGAAAAACTAATGGTGGGTTCCTCTTCTTAG 1827 43.68 MADDSTNSFAFPEDRLEALISCPSASAKSGAENEFPEGGFEENQLLIDDNSSSICVICFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDPCRLRERIVNIPMRNQDQSASGNARIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGAYVPEGDWFCHDCTISRAQHTDTELDTSFNGQNQTTTVEPRISISDIVKESSAQTVGITRRGALLHSNREPPSIVPSSRSSVAQKSLPSRGGKAAGTSARTLHRCRNIHSYIRALRDNWGAVRRGSLNFPASSSSTYCGNSSKRDTGGAELNKQTDQPQAISLQATALPECNGNSYDVEKAWRMMEIAKEKAICEGDQTLRHPVRRQITTKTKDSHTAEGQQYKIKKPDEPAKHKKEMGKQRLLELDKQLCRPAASKKNKASDEFFPTNSSSNGEFPLGKMVQTCGGDFHYENRRKASNKIVDEVSSSSTMTQASDKHQPAREAGNDHDAKSEIRTLVKINLKLLSQDKNLGYERYKEVARLATHTIMARCGLEPPPKPTKQYLSCSVCRHTEEEIRKLHRSTLMPDSCRECFMGFVKDVVNAIMLEKLMVGSSS 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 947900 951112 - PI0020081.1 Cmetu12g1391 372727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1391 608 PANTHER F18C1.6 PROTEIN 50 602 - -
Cmetu12g1391 608 SMART PHD_3 142 187 IPR001965 -
Cmetu12g1391 608 Pfam PHD-finger 143 187 IPR019787 -
Cmetu12g1391 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 105 IPR013083 -
Cmetu12g1391 608 SMART ring_2 55 95 IPR001841 -
Cmetu12g1391 608 SMART ring_2 143 186 IPR001841 -
Cmetu12g1391 608 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Cmetu12g1391 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 214 IPR013083 -
Cmetu12g1391 608 ProSiteProfiles Zinc finger PHD-type profile. 140 189 IPR019787 -
Cmetu12g1391 608 Pfam Ring finger domain 55 96 IPR001841 -
Cmetu12g1391 608 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Cmetu12g1391 608 MobiDBLite consensus disorder prediction 478 502 - -
Cmetu12g1391 608 MobiDBLite consensus disorder prediction 233 272 - -
Cmetu12g1391 608 MobiDBLite consensus disorder prediction 244 260 - -
Cmetu12g1391 608 SUPERFAMILY RING/U-box 49 104 - -
Cmetu12g1391 608 SUPERFAMILY FYVE/PHD zinc finger 132 189 IPR011011 -
Cmetu12g1391 608 MobiDBLite consensus disorder prediction 478 492 - -
Cmetu12g1391 608 MobiDBLite consensus disorder prediction 303 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1391 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1529 Cmetu-Chr2:520980 Cmetu12g1391 Cmetu-Chr12:947900 3.20E-38 dispersed
Cmetu09g1570 Cmetu-Chr9:1292318 Cmetu12g1391 Cmetu-Chr12:947900 1.90E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8941 PF00628 PHD 1.70E-08 CL0390 Cmetu TR