Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1542 ATGGATAATCTCCTCGACGATTTTCCCAATTCTTGGAATAATTATCCCTTCCATCCCCATCTTTCTAATTCTCTGTTCAAAGTCAATCGTGATGCCGTTGATCCCCTTCAGATTCCGGCCAAATCACATCAACATCAACACCACCAACTTACTAACAATTCCTCCTCCTCCCCCTCCTCCTCCAGCTCCGAAGGTGATTCTCCCGATAGTCATGACACCTCAAACACCATGCTCAAATACATCACCGAGATGTTGATGGATGAAGCTGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCGGAGAAATCTTTTTATGATGTTCTTGGTCAGAAGTATCCCCCTTCTCCAACCGGTGATTCTTCTAGCTGTGATAGAGCTTTTGGAGGTGAAGATGAATCTGAATCTTTTAATGGTAACTCTAACTCCTCTGTTTTTCACCCTTTTCAAAACTCTGTTTTAAGTCAAGATTCGTTTCTTGGGATGCAATTTCTTGGCCATTTTAGACAAGGAGCTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGACTTGGATAATGATTCTTCTAGTTCTACCTCTGTTCCTTCTAGGCCAGTTGATTTTTCTTGGGTTGCTGCTGAGAATGATGGTAGATCCAGCCTTGAAAATGGGTTGTTAAGAGAAAAGAAAAACCGTTTGAGGGAAGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAATTTTGCTGATGACAATTCATTATCTGACTTGTTTGATGAGGTTCTTCTTTGCCGTGGCGAGAGTCGGCAGTCTCCGCCGTCATGTGGTTCCGATGAATCGTCCGAGAGCGAAGCGAATAAGAAATCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAAAACAGTCGTTCTAGGAAGCAAGAGAACAGTGTGGAAGTTGTGGATTTGTGGACATTGTTAACTCAATGTGCTCAAGCTGTTTCAAATTATGATCAAAGAACTGCCAATGAACTGCTTAATCAAATCAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAAAGATTAGCTCATTTCTTTGCTAAGGGTCTCGAGACTCGTCTTGCCGCCGGTACGCCTCTATATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGGATGTCATATTTCTATGGCAATAGAACGATTCTGAAGTTAGCCGAGAAAGTAACAACATTGCATATTGTTGATTTTGGGATTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAACGGCTTTCGCGTAGACCTGGTGGACCTCCAAAACTTCGGATAACGGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCTGCTGAACGTGTTGAGCAGACTGGTCGTCGTCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAAAAATGGGAAACGGTTCGATATGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCTGATGAAACAGTAGTCGCAAACAGTCCGAGGGACAGGGTTCTAAAGTTGATCAGGAAAATCAATCCAGATCTCTTCATTCATGAAGTCACCAATGGTTCATTCAACACTCCATTTTTCAACACGAGGTTTAAAGAGGCACTCTTTTACTACTCGTCGTTGTTCGACATGTACGAAGCGACAGTTCCTCGAGACAATCCCCAGAGGTTTCTGTGTGAAAAGGAAATCCTAGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTTGAGAGAGTAGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACAAGGGCCGGGTTCAAGCAAGTACCATTAGACCAAGATTTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCAATATCGATCAAGACGGGGCGTGGATGTTGCAAGGGTGGAAGGGACGGATTATCGATGCCTTATCATGTTGGGTAGTTGCCTAA 2088 43.92 MDNLLDDFPNSWNNYPFHPHLSNSLFKVNRDAVDPLQIPAKSHQHQHHQLTNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEAEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPTGDSSSCDRAFGGEDESESFNGNSNSSVFHPFQNSVLSQDSFLGMQFLGHFRQGAEEASKFLPVNGRFGTIDLDNDSSSSTSVPSRPVDFSWVAAENDGRSSLENGLLREKKNRLREDSDEELRSSKQSANFADDNSLSDLFDEVLLCRGESRQSPPSCGSDESSESEANKKSRGRGKRKGKKNSRSRKQENSVEVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHFFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYGNRTILKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFNIDQDGAWMLQGWKGRIIDALSCWVVA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23727917 23730570 + PI0014923.1 Cmetu12g1542 372878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1542 695 MobiDBLite consensus disorder prediction 121 148 - -
Cmetu12g1542 695 MobiDBLite consensus disorder prediction 40 74 - -
Cmetu12g1542 695 Pfam GRAS domain family 325 692 IPR005202 -
Cmetu12g1542 695 ProSiteProfiles GRAS family profile. 314 693 IPR005202 -
Cmetu12g1542 695 MobiDBLite consensus disorder prediction 227 254 - -
Cmetu12g1542 695 MobiDBLite consensus disorder prediction 42 74 - -
Cmetu12g1542 695 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 268 683 IPR005202 -
Cmetu12g1542 695 MobiDBLite consensus disorder prediction 227 252 - -
Cmetu12g1542 695 MobiDBLite consensus disorder prediction 276 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1542 K27753 - - csv:101217374 1319.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu07g1100 Cmetu-Chr7:4118685 Cmetu12g1542 Cmetu-Chr12:23727917 2.10E-39 dispersed
Cmetu08g0213 Cmetu-Chr8:21612447 Cmetu12g1542 Cmetu-Chr12:23727917 1.60E-39 dispersed
Cmetu11g2092 Cmetu-Chr11:19854606 Cmetu12g1542 Cmetu-Chr12:23727917 2.40E-58 dispersed
Cmetu01g2505 Cmetu-Chr1:3059390 Cmetu12g1542 Cmetu-Chr12:23727917 5.50E-34 transposed
Cmetu01g2603 Cmetu-Chr1:28546969 Cmetu12g1542 Cmetu-Chr12:23727917 1.30E-16 transposed
Cmetu11g2076 Cmetu-Chr11:6711531 Cmetu12g1542 Cmetu-Chr12:23727917 9.00E-143 wgd
Cmetu12g1542 Cmetu-Chr12:23727917 Cmetu08g0553 Cmetu-Chr8:22272977 3.70E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g468 . . . Bda09g01510 . . . . Cmo13g00114 . . Cma13g00118 . Car13g00086 Sed01g1103 . . Bhi08g00587 Tan01g2424 Cmetu12g1542 . Hepe10g1249 . Lcy11g0169 . . . . . . . Cone1ag0631 Cone5ag1135 Cone4ag1049 . Lsi02g01346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00163
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g0553 . 80 758 GRAS Transcription Factor Family AT2G37650 54.3 4.4e-198 688.3
Cmetu12g1542 . 313 695 GRAS Transcription Factor Family AT3G46600 56.4 7.9e-126 448.0
Cmetu08g0772 . 48 467 GRAS Transcription Factor Family AT3G49950 60.3 8.2e-136 480.7
Cmetu06g2197 . 402 771 GRAS Transcription Factor Family AT3G60630 51.5 5.3e-94 342.4
Cmetu07g1514 . 66 444 GRAS Transcription Factor Family AT5G41920 71.1 1.2e-150 530.0
Cmetu08g1297 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 3.5e-115 412.1
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT5G66770 59.7 1.5e-183 639.8
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT5G66770 55.1 5.0e-171 598.2
Cmetu11g2092 . 57 545 GRAS Transcription Factor Family AT1G50600 59.2 1.5e-163 573.2
Cmetu06g1047 . 46 544 GRAS Transcription Factor Family AT1G50600 58.4 1.9e-161 566.2
Cmetu04g1140 . 103 541 GRAS Transcription Factor Family AT1G50600 56.1 3.7e-141 498.8
Cmetu04g0683 . 202 593 GRAS Transcription Factor Family AT1G50600 57.9 4.9e-133 471.9
Cmetu09g1879 . 44 567 GRAS Transcription Factor Family AT1G14920 66.1 1.7e-197 686.0
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT1G14920 56.1 4.6e-155 545.0
Cmetu06g2650 . 26 387 GRAS Transcription Factor Family AT1G55580 50.9 7.6e-103 371.3
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu11g2092 . 19 545 GRAS Transcription Factor Family AT5G48150 65.9 1.3e-193 672.9
Cmetu06g1047 . 17 544 GRAS Transcription Factor Family AT5G48150 57.5 6.0e-170 594.3
Cmetu04g1140 . 96 541 GRAS Transcription Factor Family AT5G48150 57.8 2.9e-148 522.3
Cmetu04g0683 . 128 593 GRAS Transcription Factor Family AT5G48150 53.3 3.3e-136 482.3
Cmetu01g2186 . 179 570 GRAS Transcription Factor Family AT5G48150 53.0 2.2e-119 426.4
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT2G01570 67.0 3.6e-201 698.4
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT2G01570 58.1 5.7e-159 558.1
Cmetu09g1879 . 1 565 GRAS Transcription Factor Family AT1G66350 54.8 3.3e-163 572.0
Cmetu06g1601 . 1 553 GRAS Transcription Factor Family AT1G66350 55.6 7.7e-160 560.8
Cmetu09g1879 . 46 564 GRAS Transcription Factor Family AT3G03450 58.2 4.4e-161 565.1
Cmetu06g1601 . 30 554 GRAS Transcription Factor Family AT3G03450 57.3 8.9e-154 540.8
Cmetu09g1879 . 42 564 GRAS Transcription Factor Family AT5G17490 55.0 7.7e-147 517.7
Cmetu06g1601 . 1 554 GRAS Transcription Factor Family AT5G17490 50.4 7.4e-134 474.6
Cmetu01g2186 . 1 570 GRAS Transcription Factor Family AT1G21450 57.5 7.1e-173 604.4
Cmetu06g1047 . 168 544 GRAS Transcription Factor Family AT1G21450 52.4 1.3e-113 407.5
Cmetu04g0683 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.8e-107 387.1
Cmetu12g1542 . 321 695 GRAS Transcription Factor Family AT5G59450 56.2 1.0e-126 451.1
Cmetu08g0553 . 309 758 GRAS Transcription Factor Family AT5G59450 50.3 8.1e-124 441.4
Cmetu04g1140 . 1 541 GRAS Transcription Factor Family AT4G17230 58.1 2.2e-173 605.9
Cmetu11g2092 . 1 545 GRAS Transcription Factor Family AT4G17230 50.6 1.9e-145 513.1
Cmetu06g1047 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 1.2e-134 477.2
Cmetu04g0683 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 4.4e-110 395.6
Cmetu11g2092 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.1e-160 562.4
Cmetu06g1047 . 148 544 GRAS Transcription Factor Family AT2G04890 58.9 7.2e-140 494.2
Cmetu04g0683 . 206 593 GRAS Transcription Factor Family AT2G04890 56.0 4.1e-127 451.8
Cmetu04g1140 . 161 541 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-125 445.3
Cmetu10g0531 . 1 462 GRAS Transcription Factor Family AT1G50420 61.3 9.8e-157 550.4
Cmetu02g0988 . 1 435 GRAS Transcription Factor Family AT1G50420 58.0 6.4e-148 521.2
Cmetu06g2197 . 408 771 GRAS Transcription Factor Family AT4G00150 56.0 1.2e-105 380.9
Cmetu07g1100 . 1 591 GRAS Transcription Factor Family AT3G50650 51.3 2.6e-153 539.3
Cmetu08g0213 . 1 609 GRAS Transcription Factor Family AT3G50650 51.1 6.3e-152 534.6
Cmetu08g1297 . 235 832 GRAS Transcription Factor Family AT3G54220 63.9 2.5e-203 705.7
Cmetu07g1514 . 74 442 GRAS Transcription Factor Family AT3G54220 64.2 7.6e-136 481.5
Cmetu08g1528 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 1.2e-158 557.0
Cmetu11g0520 . 97 491 GRAS Transcription Factor Family AT4G37650 55.2 1.6e-123 440.3
Cmetu11g1296 . 64 455 GRAS Transcription Factor Family AT4G37650 50.6 1.4e-111 400.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004971 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8951 PF03514 GRAS 1.40E-113 CL0063 Cmetu TF