Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1705 ATGGCTTTGGTCCGTGATCGCCGCCACCTCAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCCCTTCCCCTCCCTCCCTCCTCCGCTCCCCCCGCTCCCGCCGCCCCCTCTGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGTCACAAACGCACCTCCACTACTTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCTACTGTTCGTCGCCAAGTTTTCAGAGAGATGGAGATTCTTCGTCGGACTGATTCTCCTTATGTCGTTCAGTGTCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTTGGATCTCTTGATTCGTTATTGAAGAAGAACTCTACTCTGTCTGAAGCGACGCTTGCTCATGTATCGCGTCAGGTTCTTAATGGTCTTCATTATCTTCACTCTCATAAAATCATTCACCGTGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGCAATTCTTACGTCGGAACTTGTGCTTATATGAGCCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTATGCTGGAGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCGTTTCTTCCGGCAGGACAGAGACCGGATTGGGCTACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCGACGTTGCCGGAGGATGCGTCGGAGGAGTTTCGGAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGTAAAAGATGGACGGCAGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCATCGGATAATCGATGA 963 50.36 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPPAPAAPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPTLPEDASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSSDNR 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1674064 1675343 - PI0020953.1 Cmetu12g1705 373041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1705 320 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Cmetu12g1705 320 CDD PKc_MAPKK_plant_like 47 309 - -
Cmetu12g1705 320 SMART serkin_6 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu12g1705 320 MobiDBLite consensus disorder prediction 23 43 - -
Cmetu12g1705 320 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
Cmetu12g1705 320 FunFam Mitogen-activated protein kinase 2 129 320 - -
Cmetu12g1705 320 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Cmetu12g1705 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cmetu12g1705 320 FunFam Mitogen-activated protein kinase kinase 30 124 - -
Cmetu12g1705 320 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu12g1705 320 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu12g1705 320 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Cmetu12g1705 320 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 44 311 - -
Cmetu12g1705 320 MobiDBLite consensus disorder prediction 23 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1705 K20604 - - csv:101203133 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0417 Cmetu-Chr4:14723343 Cmetu12g1705 Cmetu-Chr12:1674064 6.50E-84 dispersed
Cmetu05g0766 Cmetu-Chr5:481568 Cmetu12g1705 Cmetu-Chr12:1674064 4.00E-54 dispersed
Cmetu05g0779 Cmetu-Chr5:192669 Cmetu12g1705 Cmetu-Chr12:1674064 2.10E-63 dispersed
Cmetu08g0179 Cmetu-Chr8:9816372 Cmetu12g1705 Cmetu-Chr12:1674064 7.50E-25 dispersed
Cmetu09g0153 Cmetu-Chr9:18993542 Cmetu12g1705 Cmetu-Chr12:1674064 3.70E-29 dispersed
Cmetu12g0910 Cmetu-Chr12:2662557 Cmetu12g1705 Cmetu-Chr12:1674064 9.10E-19 dispersed
Cmetu12g1705 Cmetu-Chr12:1674064 Cmetu09g0475 Cmetu-Chr9:20039228 1.30E-24 dispersed
Cmetu12g1705 Cmetu-Chr12:1674064 Cmetu02g1578 Cmetu-Chr2:22503597 1.70E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0779 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 65.7 9.2e-125 443.7
Cmetu02g0978 . 28 338 MAP Kinase Kinase Gene Family AT4G26070 66.3 3.6e-121 431.8
Cmetu05g0766 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 2.1e-108 389.4
Cmetu02g0978 . 1 311 MAP Kinase Kinase Gene Family AT4G29810 65.1 5.7e-119 424.5
Cmetu05g0779 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.4e-117 419.9
Cmetu05g0766 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.7e-110 396.4
Cmetu04g3241 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.5 5.0e-228 787.3
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.5 5.1e-129 458.0
Cmetu12g1705 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 3.8e-84 308.9
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 67.8 6.9e-128 454.1
Cmetu12g1705 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.1e-84 309.7
Cmetu05g0766 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 6.1e-172 600.5
Cmetu05g0779 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.3 2.4e-107 386.0
Cmetu02g0978 . 7 337 MAP Kinase Kinase Gene Family AT5G56580 53.6 2.1e-103 372.9
Cmetu12g1705 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 2.4e-108 389.0
Cmetu04g0417 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 52.9 9.3e-76 280.8
Cmetu12g1705 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.3e-82 301.2
Cmetu12g1705 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.1e-113 406.8
Cmetu04g0417 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 2.9e-77 285.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70944 PF00069 Pkinase 1.10E-65 CL0016 Cmetu PK