Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1860 ATGCCAAGATTTTCAAATGAAATGAAGCAAAAAGATGGTTATCTGGTATACCCATCTCCCCTTTCACCTTTTGATGGTGGCACTGATCCAAAATCAAATGACTCTACACCATCGCCATCATCATCATCTTCTTCTTTCAGCAGTATCAGCCCAATCCTTCTTCTAGTTATAGTGATTCTAGCAGTCATCTTCTTCATCTCTGGTTTACTCCATTTGCTCGTTCGATTTCTACTAAAAAGATCTTCCCCATCAATCTACCAATCCAATCGATACCCAGAACGGCCTGGATCTCACACGCTCCAAAGACAGCTCCAGCAGCTCTTTCGCCTTCACGATTCAGGCCTCGACCAAACCTTCATCGACGCTTTGCCAGTGTTCTTGTACAAAGATATCATGGGTTTAAAAGAGCCATTCGATTGCGCCGTTTGTCTCTACGAATTTTCCGATCAGGACAGGCTGAGATTACTCCCCATCTGTAGCCATGCTTTTCACATCAGTTGCATAGACACATGGCTACTCTCAAACTCCACATGTCCACTCTGCAGAGCCACCCTTTTGGGCTCTAGTTTCCCTTCCGAAAACCCTAATCTCAACGAGATTTTAGGGCAAGAAAACAATTATCACAGACACCCAGAAAACACGGTTTCTGGAAATCATCAGAAACGAGTAACAACAACAATGGAGGAATCTGCAGGGGAAATGAGAGTAATGTCTGTGAGACTCGGGAAGTTCAAGAAACTAAACAACGAAGAAGATGATGATGAAGAAGAAATAGAAGAGAAAGGAGAAAGCAGTAGCCAAAACAATCTAAATGCGAGAAGATGCTACTCAATGGGGACTTACCAATACGTTGTTGGAGAATCAGATTTACAGGTGATGAAGGAGAAGTTAAACACAGAGAATGTAAGGGGAAATGGGGAAATGGAAGGGAAGAAAATCAGTGGGAGAAGTAAAGGGGAAAGTTTCTCGGTATCGAAGATTTGGCAATGGTCGAAGAAGAGTGAGTTGCCAATTACGAGCAGCTCCAACAGTGAATGGAAGACGGAAGTTGTGTGA 1056 43.18 MPRFSNEMKQKDGYLVYPSPLSPFDGGTDPKSNDSTPSPSSSSSSFSSISPILLLVIVILAVIFFISGLLHLLVRFLLKRSSPSIYQSNRYPERPGSHTLQRQLQQLFRLHDSGLDQTFIDALPVFLYKDIMGLKEPFDCAVCLYEFSDQDRLRLLPICSHAFHISCIDTWLLSNSTCPLCRATLLGSSFPSENPNLNEILGQENNYHRHPENTVSGNHQKRVTTTMEESAGEMRVMSVRLGKFKKLNNEEDDDEEEIEEKGESSSQNNLNARRCYSMGTYQYVVGESDLQVMKEKLNTENVRGNGEMEGKKISGRSKGESFSVSKIWQWSKKSELPITSSSNSEWKTEVV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2353185 2355969 + PI0025139.1 Cmetu12g1860 373196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1860 351 SMART ring_2 140 181 IPR001841 -
Cmetu12g1860 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 187 IPR013083 -
Cmetu12g1860 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 328 - -
Cmetu12g1860 351 Coils Coil 244 264 - -
Cmetu12g1860 351 MobiDBLite consensus disorder prediction 246 271 - -
Cmetu12g1860 351 CDD RING-H2_EL5-like 139 182 - -
Cmetu12g1860 351 SUPERFAMILY RING/U-box 119 186 - -
Cmetu12g1860 351 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Cmetu12g1860 351 FunFam RING-H2 finger protein ATL46 102 187 - -
Cmetu12g1860 351 MobiDBLite consensus disorder prediction 1 46 - -
Cmetu12g1860 351 Pfam Ring finger domain 139 182 IPR001841 -
Cmetu12g1860 351 MobiDBLite consensus disorder prediction 26 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1860 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu08g0464 Cmetu-Chr8:21015674 Cmetu12g1860 Cmetu-Chr12:2353185 7.70E-19 dispersed
Cmetu10g1387 Cmetu-Chr10:14355758 Cmetu12g1860 Cmetu-Chr12:2353185 4.70E-13 dispersed
Cmetu11g2065 Cmetu-Chr11:5361416 Cmetu12g1860 Cmetu-Chr12:2353185 4.10E-11 dispersed
Cmetu10g1840 Cmetu-Chr10:18765781 Cmetu12g1860 Cmetu-Chr12:2353185 2.60E-69 wgd
Cmetu12g1860 Cmetu-Chr12:2353185 Cmetu09g1815 Cmetu-Chr9:19185045 6.20E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013813 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 0 25