Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1883 ATGGAGGAAGATAACAGTGGTCTTCTTATTCAGAGTTTGATCGATGTTGTTAATGAAATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAACAGTATTGTAATTTGTCTAGGAGATTGAAGCTTTTGATTCCAATGTTTGAAGAGATTAGAGATAGTAAAGACCGTATTACTGAAGATACTCTTAAGGCTCTTGTTCTGTTGAAAGAAGCTCTTGAATCTGCTAAGAAGTTGCTTAGATTCGGCAGCGAAGGGAGTAAGATTTTCTTGGCTGTAGAGAGGGATCAAATTATGAACAAATTTCACGAGGTAACTGCTCAGTTGGAACAAGCGTTGGAAGGAATAGCCTACGATAAACTAGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAATTCAGAAGGGCCAGAGGCAGGGCCGAAGCTCCTGACTCTGAGCTGTTGGAAGATATCCTTGCCCTTAACAACATAAGCAATGATTCTTCTATAGATCAAGACCGCCTGAGGAGACTGTCCGAAAAATTACAGTTAATAGGAATATCCGATCTTACGCAAGAATCAATAGCTTTGCATGAGATGGTTGCTGCTACTGATGGTGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTTGTGCAAACGGAGAACCTTGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGACCCCAATTATACCAGATGATTTTCGCTGCCCAATTCCCTGGACAGGGCATGGGACATGTCCAAAGACACAACAGAACCTCTCAAGCATTACTCTTACCCCGAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGTGAGGCCAACGGTATTGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCAGCTGCTGAACGCACGAAAATTGATATTCTTCTTTGCAAACTCGCATCTGGAAATCCGGAAGATCAACGATCTGCAGCCGGTGAGATTCGACTTCTTGCAAAACGGAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATCCCTCTCCTTGTTGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTGACGGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTAAAAAAGGGAAGCATGGAAGCACGGGAAAATGCAGCAGCCACTCTTTTCAGCCTTTCGGTTGTCGATGAAAACAAAGTTAGAATTGGCGCCTCTGGGGCTATCCCACCTCTCGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACAGGAATGGTAGATGAAGCCTTAGCTATCTTAGCTATACTAGCTAGCCATTCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGATCCCCCAGGAACAGAGAAAATGCGGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGAGAACTTGGAGTGATTAGTTCCTTGATAGATTTGGCACAGAATGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATAAACCGACTGTTTGAGCATGCAGCACATCCGGAAGAGGTTCGGGTGCTTCGGTTGCAAGCGTCGGAGTCTCAACCTCAATGCCAACCATCACAATCAACCTCAACAACGGAAGTCGTTGGTAGCTGA 1941 45.29 MEEDNSGLLIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKDRITEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVERDQIMNKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRARGRAEAPDSELLEDILALNNISNDSSIDQDRLRRLSEKLQLIGISDLTQESIALHEMVAATDGDPGQSIEKMAGLLKKIKDFVQTENLETDTPSREKSPPASCSGQVSNDKNNKTPIIPDDFRCPIPWTGHGTCPKTQQNLSSITLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISSLIDLAQNGTDRGKRKAAQLLERINRLFEHAAHPEEVRVLRLQASESQPQCQPSQSTSTTEVVGS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23520530 23524742 - PI0000038.1 Cmetu12g1883 373219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1883 646 FunFam RING-type E3 ubiquitin transferase 508 625 - -
Cmetu12g1883 646 PANTHER U BOX DOMAIN-CONTAINING 31 605 - -
Cmetu12g1883 646 SUPERFAMILY ARM repeat 332 605 IPR016024 -
Cmetu12g1883 646 Gene3D - 312 468 IPR011989 -
Cmetu12g1883 646 Gene3D - 471 631 IPR011989 -
Cmetu12g1883 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 414 IPR000225 GO:0005515
Cmetu12g1883 646 FunFam RING-type E3 ubiquitin transferase 6 119 - -
Cmetu12g1883 646 Gene3D - 9 118 IPR036537 GO:0007166
Cmetu12g1883 646 FunFam RING-type E3 ubiquitin transferase 317 468 - -
Cmetu12g1883 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515
Cmetu12g1883 646 ProSiteProfiles U-box domain profile. 271 307 IPR003613 GO:0004842|GO:0016567
Cmetu12g1883 646 MobiDBLite consensus disorder prediction 228 259 - -
Cmetu12g1883 646 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Cmetu12g1883 646 Pfam Armadillo/beta-catenin-like repeat 526 565 IPR000225 GO:0005515
Cmetu12g1883 646 Pfam Armadillo/beta-catenin-like repeat 444 482 IPR000225 GO:0005515
Cmetu12g1883 646 CDD MLKL_NTD 11 139 - -
Cmetu12g1883 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 307 IPR013083 -
Cmetu12g1883 646 SMART arm_5 525 565 IPR000225 GO:0005515
Cmetu12g1883 646 SMART arm_5 361 401 IPR000225 GO:0005515
Cmetu12g1883 646 SMART arm_5 484 524 IPR000225 GO:0005515
Cmetu12g1883 646 SMART arm_5 443 483 IPR000225 GO:0005515
Cmetu12g1883 646 SMART arm_5 567 607 IPR000225 GO:0005515
Cmetu12g1883 646 SMART arm_5 402 442 IPR000225 GO:0005515
Cmetu12g1883 646 MobiDBLite consensus disorder prediction 625 646 - -
Cmetu12g1883 646 MobiDBLite consensus disorder prediction 235 256 - -
Cmetu12g1883 646 SUPERFAMILY RING/U-box 253 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1883 K27628 - - csv:101218572 1098.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu10g1622 Cmetu-Chr10:21513512 Cmetu12g1883 Cmetu-Chr12:23520530 4.60E-98 dispersed
Cmetu11g2533 Cmetu-Chr11:6553838 Cmetu12g1883 Cmetu-Chr12:23520530 2.20E-135 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
Cmetu04g0535 . 1 786 U-box Gene Family AT5G15400 79.4 0.0e+00 1236.1
Cmetu11g1277 . 196 831 U-box Gene Family AT2G23140 61.1 1.6e-117 420.6
Cmetu03g0640 . 1 623 U-box Gene Family AT1G24330 66.6 1.6e-230 796.2
Cmetu10g0234 . 1 744 U-box Gene Family AT1G24330 57.5 9.1e-221 763.8
Cmetu03g0640 . 1 623 U-box Gene Family AT1G67530 66.4 1.6e-228 789.6
Cmetu10g0234 . 1 744 U-box Gene Family AT1G67530 56.3 3.1e-216 748.8
Cmetu04g0629 . 1 351 U-box Gene Family AT4G21350 59.9 2.0e-112 402.9
Cmetu10g1534 . 276 463 U-box Gene Family AT1G71020 72.0 4.7e-74 275.8
Cmetu09g1480 . 246 457 U-box Gene Family AT1G71020 52.1 1.0e-52 204.9
Cmetu10g1622 . 210 413 U-box Gene Family AT1G71020 52.2 2.6e-48 190.3
Cmetu11g2533 . 247 424 U-box Gene Family AT1G71020 54.3 3.1e-46 183.3
Cmetu10g1534 . 16 667 U-box Gene Family AT1G23030 56.2 8.2e-108 388.3
Cmetu11g2533 . 93 634 U-box Gene Family AT2G28830 50.8 7.8e-100 361.7
Cmetu12g1883 . 94 608 U-box Gene Family AT2G28830 53.9 1.8e-75 280.8
Cmetu11g2533 . 11 648 U-box Gene Family AT3G46510 66.5 7.6e-160 561.2
Cmetu12g1883 . 1 610 U-box Gene Family AT3G46510 64.5 3.5e-136 482.6
Cmetu10g1622 . 5 620 U-box Gene Family AT3G46510 58.5 1.5e-123 440.7
Cmetu10g1622 . 9 622 U-box Gene Family AT3G54850 69.3 1.6e-167 586.6
Cmetu11g2533 . 13 627 U-box Gene Family AT3G54850 57.4 3.8e-116 416.0
Cmetu11g2343 . 92 609 U-box Gene Family AT5G42340 62.9 6.3e-106 382.1
Cmetu08g1604 . 9 644 U-box Gene Family AT5G01830 53.8 2.6e-171 599.4
Cmetu12g0678 . 1 714 U-box Gene Family AT1G29340 67.4 1.0e-245 846.7
Cmetu08g0024 . 7 423 U-box Gene Family AT3G52450 51.0 3.8e-115 412.1
Cmetu04g1359 . 1 404 U-box Gene Family AT2G35930 54.6 4.1e-119 425.2
Cmetu08g0024 . 7 423 U-box Gene Family AT2G35930 50.6 5.2e-114 408.3
Cmetu05g1695 . 13 413 U-box Gene Family AT2G35930 51.5 5.7e-113 404.8
Cmetu06g1791 . 9 424 U-box Gene Family AT3G19380 63.9 5.2e-146 514.6
Cmetu06g1791 . 1 424 U-box Gene Family AT1G49780 64.3 3.2e-151 531.9
Cmetu08g0065 . 1 407 U-box Gene Family AT5G64660 55.1 1.1e-122 437.2
Cmetu08g0065 . 1 407 U-box Gene Family AT5G09800 51.3 7.9e-107 384.4
Cmetu07g0012 . 1 450 U-box Gene Family AT3G49810 64.0 1.1e-157 553.5
Cmetu03g2084 . 1 455 U-box Gene Family AT3G49810 62.4 8.9e-152 533.9
Cmetu07g0012 . 1 450 U-box Gene Family AT5G65920 63.1 3.0e-152 535.4
Cmetu03g2084 . 1 455 U-box Gene Family AT5G65920 62.6 2.2e-150 529.3
Cmetu06g2078 . 1 875 U-box Gene Family AT2G45910 52.5 2.5e-232 802.4
Cmetu03g1858 . 183 378 U-box Gene Family AT2G45910 50.5 1.9e-51 201.4
Cmetu05g0670 . 4 728 U-box Gene Family AT2G19410 51.6 1.1e-208 723.8
Cmetu09g0283 . 69 695 U-box Gene Family AT4G25160 53.6 1.6e-154 543.9
Cmetu09g1014 . 39 553 U-box Gene Family AT5G40140 55.5 3.2e-95 346.3
Cmetu12g1587 . 29 498 U-box Gene Family AT5G40140 50.4 1.5e-55 214.5
Cmetu10g1670 . 1 591 U-box Gene Family AT1G68940 51.0 2.0e-162 570.5
Cmetu03g1218 . 4 595 U-box Gene Family AT1G76390 56.0 2.4e-171 599.7
Cmetu03g1218 . 13 612 U-box Gene Family AT1G20780 55.6 4.4e-178 622.1
Cmetu10g0234 . 1 753 U-box Gene Family AT1G27910 62.4 1.2e-257 886.3
Cmetu03g0640 . 1 623 U-box Gene Family AT1G27910 63.4 4.0e-221 765.0
Cmetu08g0763 . 1 592 U-box Gene Family AT5G67530 74.2 2.0e-260 895.2
Cmetu04g1410 . 12 162 U-box Gene Family AT5G67530 50.3 9.9e-42 168.7
Cmetu06g0539 . 1 517 U-box Gene Family AT1G04510 74.3 1.0e-220 763.1
Cmetu06g0539 . 1 486 U-box Gene Family AT2G33340 73.4 4.2e-208 721.1
Cmetu04g0321 . 10 192 U-box Gene Family AT3G07370 64.5 1.2e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43