Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g1898 ATGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTGCACAGCCCTCTCGTGCTTCTGCCATCGACTTCAGCACTGCACAGGATACAAAAGGTTCGTCGAAGAATTTTCCGAAGCACGAGACTCGACATCTTTCCGAGCATAAGATGTGCACGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCAGATATGTCAATAAAGCTCTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCAGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTGTATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACTCATAACGTGCGATCTATATCTCTTCATCCTTCAGGAGATTATCTCTTAGCAGGAACGGATCATCAGATTGCCCACTTGTATGATGTCAATACTTTTCAGTGTTTTTTATCTGCAAATGCTCCTGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCTTCAAAAGACGGCGCAGTTCGTTTATGGGACGGCGTTAGTGCAAAATGTATTCGGTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTGTGGGACGTGGGGACGGGGAAACTAGTCAAACAATATGTTGGCGCTACTCATATGCAATTGAGGTGTCAGGCTGTATTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCTAACCATGTTGGTGCACCTCGATGGCTCGAGCACTCACTGACAGAGTCGGCCTTCATTTCCTGCGGGACTGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 1065 43.29 MNLVHQCPLHLDLHSPLVLLPSTSALHRIQKVRRRIFRSTRLDIFPSIRCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHQIAHLYDVNTFQCFLSANAPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCIRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSLTESAFISCGTDKSIRFWKETL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 867039 872293 - PI0011490.1 Cmetu12g1898 373234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g1898 354 Pfam WD domain, G-beta repeat 94 129 IPR001680 GO:0005515
Cmetu12g1898 354 Pfam WD domain, G-beta repeat 189 219 IPR001680 GO:0005515
Cmetu12g1898 354 Pfam WD domain, G-beta repeat 145 168 IPR001680 GO:0005515
Cmetu12g1898 354 Pfam WD domain, G-beta repeat 47 72 IPR001680 GO:0005515
Cmetu12g1898 354 Pfam WD domain, G-beta repeat 224 263 IPR001680 GO:0005515
Cmetu12g1898 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 131 - -
Cmetu12g1898 354 SMART WD40_4 38 73 IPR001680 GO:0005515
Cmetu12g1898 354 SMART WD40_4 90 129 IPR001680 GO:0005515
Cmetu12g1898 354 SMART WD40_4 176 219 IPR001680 GO:0005515
Cmetu12g1898 354 SMART WD40_4 135 173 IPR001680 GO:0005515
Cmetu12g1898 354 SMART WD40_4 311 351 IPR001680 GO:0005515
Cmetu12g1898 354 SMART WD40_4 222 263 IPR001680 GO:0005515
Cmetu12g1898 354 CDD WD40 47 351 - -
Cmetu12g1898 354 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Cmetu12g1898 354 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Cmetu12g1898 354 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cmetu12g1898 354 Gene3D - 30 353 IPR015943 GO:0005515
Cmetu12g1898 354 SUPERFAMILY WD40 repeat-like 45 351 IPR036322 GO:0005515
Cmetu12g1898 354 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Cmetu12g1898 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 138 IPR001680 GO:0005515
Cmetu12g1898 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 272 IPR001680 GO:0005515
Cmetu12g1898 354 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cmetu12g1898 354 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 48 353 IPR044633 GO:0005848|GO:0031124
Cmetu12g1898 354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g1898 K14406 - - csv:101206503 610.912
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32