Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g2016 ATGGGTCTTACTTCTCTTCAAGTTTGCATGGACTCTTCTGATTGGCTTCAGGGTACGATGAACGAGGAGTCAGGGATGGATTCTTCGTCATTATCGGGAGATATGCTATCATGTTCAAGGCCATTAACAGAGAGGAGATTAAGGCCACAACATGATCAAGCTTTGAAATGTCCAAGATGTGATTCGACTCATACCAAATTTTGCTATTACAACAATTACAGCCTCTCTCAACCTCGTTACTTTTGCAAAACTTGTAGAAGGTATTGGACTAAAGGTGGAACTTTAAGAAATATTCCTGTTGGTGGTGGTTGTAGAAAGAACAAAAAAGTTTCCACTACAAAAAAATCCAATGATTCACAACAACAACAGCAACAACCACAAATTCAACAACCCATTTCTCAAAATCATCATCTTCTTCATGGCCCTTCTTCATCTTCATCTTCTTCACTTCATCACATTCATAATCCCACTGATCTTCATCTCTCATTTCCAGATCAAATTCAATTTCCACATTTCAATCCTCTCACTCCAAATTTCACCATTGGAATGCTTGAAACTCATCATCATCATCATCATCAACAAACTCGACCCATTGATTTCATGGACACAAAATGGAAGCCATTGTTGGGAATAATGGTCATCATTACACTACAAACACTGATCATTTAG 669 37.97 MGLTSLQVCMDSSDWLQGTMNEESGMDSSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTTKKSNDSQQQQQQPQIQQPISQNHHLLHGPSSSSSSSLHHIHNPTDLHLSFPDQIQFPHFNPLTPNFTIGMLETHHHHHHQQTRPIDFMDTKWKPLLGIMVIITLQTLII 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2441278 2443064 + PI0003118.1 Cmetu12g2016 373352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g2016 222 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Cmetu12g2016 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 182 IPR045174 GO:0003700|GO:0006355
Cmetu12g2016 222 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Cmetu12g2016 222 MobiDBLite consensus disorder prediction 100 130 - -
Cmetu12g2016 222 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Cmetu12g2016 222 MobiDBLite consensus disorder prediction 114 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g2016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1182 Cmetu-Chr2:23175545 Cmetu12g2016 Cmetu-Chr12:2441278 2.40E-29 dispersed
Cmetu04g2836 Cmetu-Chr4:2247907 Cmetu12g2016 Cmetu-Chr12:2441278 5.70E-26 dispersed
Cmetu12g0765 Cmetu-Chr12:22242536 Cmetu12g2016 Cmetu-Chr12:2441278 2.70E-30 dispersed
Cmetu12g0829 Cmetu-Chr12:5208364 Cmetu12g2016 Cmetu-Chr12:2441278 1.50E-25 dispersed
Cmetu12g1136 Cmetu-Chr12:5217211 Cmetu12g2016 Cmetu-Chr12:2441278 2.20E-26 dispersed
Cmetu12g1952 Cmetu-Chr12:928880 Cmetu12g2016 Cmetu-Chr12:2441278 2.50E-24 dispersed
Cmetu12g2016 Cmetu-Chr12:2441278 Cmetu12g2109 Cmetu-Chr12:5528447 3.40E-19 dispersed
Cmetu12g2016 Cmetu-Chr12:2441278 Cmetu11g1746 Cmetu-Chr11:6026316 2.70E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.4e-44 176.4
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT1G29160 50.9 1.4e-39 159.8
Cmetu09g0093 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.9e-42 168.7
Cmetu12g2109 . 17 177 C2C2-Dof Transcription Factor Family AT2G34140 55.3 1.7e-42 169.5
Cmetu04g2899 . 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.5e-38 155.6
Cmetu08g1927 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 65.2 2.6e-39 159.8
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 61.7 3.4e-39 159.5
Cmetu09g0093 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 8.0e-44 174.9
Cmetu12g2016 . 1 108 C2C2-Dof Transcription Factor Family AT5G62940 65.4 9.3e-38 154.8
Cmetu08g1957 . 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.2e-37 153.7
Cmetu10g0790 . 1 132 C2C2-Dof Transcription Factor Family AT5G02460 62.6 8.4e-37 151.8
Cmetu08g1957 . 43 134 C2C2-Dof Transcription Factor Family AT3G55370 74.5 6.0e-37 152.1
Cmetu08g1927 . 53 135 C2C2-Dof Transcription Factor Family AT3G55370 80.7 7.8e-37 151.8
Cmetu02g1182 . 28 332 C2C2-Dof Transcription Factor Family AT5G60850 51.0 7.2e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008227 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 3 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8982 PF02701 zf-Dof 8.80E-34 No_clan Cmetu TF