Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g2048 ATGGCATCGCAGGACAAGGGTCGTCCATTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCTAGAAATGAGAAGAAGACCACTGGAACTGCTGCCAATATGGTGGTTCCTCAAGAAAGAAATGAACCTGTCTTCAACAATGAGAGTTACCCTCAGTATCCTCCGCCGAAGAAGAGGTGGTTTTGCTGTGGTTGA 234 44.44 MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGTAANMVVPQERNEPVFNNESYPQYPPPKKRWFCCG 77
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2910478 2911927 - PI0004873.1 Cmetu12g2048 373384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g2048 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
Cmetu12g2048 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 3 75 IPR040387 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g2048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0978 Cmetu-Chr1:13987470 Cmetu12g2048 Cmetu-Chr12:2910478 3.50E-16 dispersed
Cmetu10g1588 Cmetu-Chr10:17991649 Cmetu12g2048 Cmetu-Chr12:2910478 7.10E-15 dispersed
Cmetu11g2012 Cmetu-Chr11:18676163 Cmetu12g2048 Cmetu-Chr12:2910478 1.70E-18 dispersed
Cmetu12g2048 Cmetu-Chr12:2910478 Cmetu06g2769 Cmetu-Chr6:20249988 2.20E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g894 . . . . . . Bma06g00243 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0050 . . . . . . . . . . . Bpe15g00666 . . Sed08g2464 . . . . . Car18g00203 . . Bhi08g01696 Tan05g2899 Cmetu12g2048 Lac10g0538 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141