Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu12g2098 ATGGGGGATTCACCAAAAAGCCCAGAGAGCGGTGGTAGTGGGGGAGGGCGTTGTCCGTCGTCGTTAATGGAAAGCTTGTTGGGTCTTCTTCGGATTCGGATCATTCGCGGCGTCAACCTTGCCGTTCGTGACGTTCGTAGCAGCGATCCTTATATTGTTGTTAAAATGTCTAAACAGAAATTGAAGACTCGTGTAATTAAAAAGGATATTAATCCAGAATGGAACGAAGACCTTACTTTATCTGTTACAGATCCCAACGCTTTAGTCAAGCTGACGGTGTACGACCACGACACATTCAGCATGGACGACAAGATGGGCGATGCAGACTTTGAGATAGGGTCATACATCGAAGCATTGAAGATGGATCTATCAGGGTTACCGAGTGGAACGATAGTATCAAAAGTGCAACCAAGTAGGCAAAATTGCCTGGCGGAAGAGAGTGGGATTGTGTGGGAAGAAGGCAAAGTTGTTCAAAACATTTGTCTACGATTGCGCAATGTCGAATGTGGAGAACTCGAAATCCAATTGCAATGGATTGATCTCCCTGGTTCTAAAGCTGCGTTGATCACGAACACGTCGACATGGTTGGCAGTAAGTGGCAACAATTCAATTCAAAGTAGTACAAGTGTGGAAGTGGCTGGCAACAATTCAATTCAAAGTAGTACAGACTCAATTCAAAGTAATACAGACGTGGAATGTTTTGAGACGATACCTACAAAACCGTCAAAGAAGCTTTGGACACCCGTGTGGCGTCTACCAAGTATATTTCGCTATGTAAATCGCTTCAAGTCTACACTTATTCTCCAACGTTGTTTATATAAGAAATGA 828 43.72 MGDSPKSPESGGSGGGRCPSSLMESLLGLLRIRIIRGVNLAVRDVRSSDPYIVVKMSKQKLKTRVIKKDINPEWNEDLTLSVTDPNALVKLTVYDHDTFSMDDKMGDADFEIGSYIEALKMDLSGLPSGTIVSKVQPSRQNCLAEESGIVWEEGKVVQNICLRLRNVECGELEIQLQWIDLPGSKAALITNTSTWLAVSGNNSIQSSTSVEVAGNNSIQSSTDSIQSNTDVECFETIPTKPSKKLWTPVWRLPSIFRYVNRFKSTLILQRCLYKK 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1567708 1570409 + PI0010557.1 Cmetu12g2098 373434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu12g2098 275 SMART C2_3c 29 124 IPR000008 -
Cmetu12g2098 275 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 24 180 IPR035892 -
Cmetu12g2098 275 CDD C2_ArfGAP 27 170 - -
Cmetu12g2098 275 Gene3D C2 domain 24 191 IPR035892 -
Cmetu12g2098 275 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Cmetu12g2098 275 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 25 185 IPR044562 -
Cmetu12g2098 275 Pfam C2 domain 28 114 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu12g2098 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g1457 Cmetu-Chr6:14101508 Cmetu12g2098 Cmetu-Chr12:1567708 7.40E-64 dispersed
Cmetu09g1898 Cmetu-Chr9:5161005 Cmetu12g2098 Cmetu-Chr12:1567708 1.20E-56 dispersed
Cmetu10g0965 Cmetu-Chr10:6075503 Cmetu12g2098 Cmetu-Chr12:1567708 2.70E-48 dispersed
Cmetu12g0377 Cmetu-Chr12:7216805 Cmetu12g2098 Cmetu-Chr12:1567708 2.20E-30 dispersed
Cmetu12g0534 Cmetu-Chr12:15580086 Cmetu12g2098 Cmetu-Chr12:1567708 1.00E-27 dispersed
Cmetu12g2098 Cmetu-Chr12:1567708 Cmetu02g0787 Cmetu-Chr2:22352250 1.50E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g194 . . . . . . . . Cmo13g01025 Cmo18g00057 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01395 Cme12g01829 . . . . . . . . Sed08g2759 . . Cma13g00989 Cma18g00074 Car13g00824 Car18g00066 Cpe09g01112 . Bhi08g01295 Tan05g2189 Cmetu12g2098 Lac10g0291 Hepe07g2353 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000507 5 4 5 6 4 3 6 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 7 5 2 113