Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00001 ATGCGTACGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCCGCCCCAACCATCAGCGCCGCTTTCCTCTTCCTCCCCTTATGCATAATGGTCGTCTTGTCGGCTTCCGATGCCGAAACCCTCCTTCAATTCAAGCGCTCTTTGACCTCCACCACCTCTCTTCGCAGCTGGGACCCCTCTGTTCCTCCTTGCGACAACCGCAAGGCTAACTGGGCGGGTGTGCTTTGTATGAATGGCTATATTAAGGGTCTGCGGCTTGAGAATATGGGGCTTAAGGGCGAGGTTGATGTGAATCCCCTCGTTTCTTTGACTCATTTGCGCACCCTCAGCTTCATGAACAACACCTTGGTTGGGCCTTGGCCTAGTGTTATAAGCAAACTAGGCAATCTACGATCTGTTTATCTCTCCTATAACCATTTTTCTGGAGAAATCCCAGACGATGCCTTTACTAGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAAGGGGCAAATTCCCTTATCTCTCGCTTCCGTGTCTACGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAGAGGCCAAGTTCCCCACCTTGAAATGGATACTTTGAAGAAACTTAATGTTTCCAACAATGAGTTGAGGGGCCCCATACCTAGAAGCTTAAGCCATATGGATCCTACCTGTTTTTCAGGTAACAGTGATTTGTGTGGAGATCCTCTTCCAGCATGCGAGATATCCCAGTTGTCACCCTCAGGGCTGCTGAAAATTGCGGTGATACTGATAGTTCTGGGGGTAACATTAGCAGTGACAGCTGCAATTTTCATCATTTTGGTTTTAAGGAAGCATCCAGCAGGAGGCAGTATTGAAGAGGAGAACAAGCCAGCGGAGAGTGCATACAGATCCACGCAGTCGTCGTCGGTGGCACCGGCTCCGAAGAGGGGGGCAGAGAATGGCAAACTGTTGTTCGTGAGGAATGACCGGGAGAGGTTCGACTTACAGGATCTGCTCCGAGCGTCCGCCGAAGTATTAGGGAGTGGCTCATTTGGGTCTTCCTACAAAGCAACTGTTCTCTGTGGTGCGGTGGTGGTGAAGCGATACAAGCACATGAACAACGCGGGAAGAGAGGAGTTTCATGAGTACATGAGAAGGCTAGGCAGGTTGACGCATCCAAATCTACTGCCCCTGGTTGCCTATTATTACAGGAAGGAAGAGAAGCTCTTGGTTTTCGACTTTGTAGACAACGGCAGTTTGGCAAGCCATCTGCACGGGAACCACAACTTGGAGGAGCCAGGCCTGGATTGGGGCGCAAGGTTGAAGATCATCAAAGGGATAGCAAGAGGGTTATGTTACCTCTACACCTCCCTGCCCAACATAGCAGCACCCCATGGCCATCTCAAATCTTCAAACGTGCTGCTAGACGAGTCGTTTGAACCTCTGCTCACGGATTACGGATTAATCCCGGTAGCCAACCTTGAGCACAGCCAAACACTGATGATGGCCTACAAATCACCGGAGCATGCGCAGTTGGGGCGCATAACCAAGAAGAGCGACGTGTGGAGCTTAGGAATTGTGATACTGGAGATGTTGACTGGTAGGTTCCCAGAGAACTACCTCACCAGAAATCATGACATCAAAGCAGACCTGGCCAGTTGGGTGAACAACATGATAAAGGAAAAGAAGACTGCACAAGTGTTCGATGCAGAGCTGGGGAGAGCCAGGGAGAGCAACAAAGGCGAACTGTTGAAGATGCTGAAGATTGGGTTGAGTTGCTGTGAGGACGATGTGGATAGAAGGTCGGACTTGAATGAGATAGTAAAACAAATTGAAGAGCTGAAGGAGGAAGAGTTGAAGGAGGAAGAGTTGAAGGAGGAAGAGTTGAGTGATGATGGAGTTGACTTCTCCCCACGCTAA 1905 49.5 MRTGVRVAGLMRAPAPTISAAFLFLPLCIMVVLSASDAETLLQFKRSLTSTTSLRSWDPSVPPCDNRKANWAGVLCMNGYIKGLRLENMGLKGEVDVNPLVSLTHLRTLSFMNNTLVGPWPSVISKLGNLRSVYLSYNHFSGEIPDDAFTSMKFLKKVFLTNNEFKGQIPLSLASVSTLMELRLDGNKFRGQVPHLEMDTLKKLNVSNNELRGPIPRSLSHMDPTCFSGNSDLCGDPLPACEISQLSPSGLLKIAVILIVLGVTLAVTAAIFIILVLRKHPAGGSIEEENKPAESAYRSTQSSSVAPAPKRGAENGKLLFVRNDRERFDLQDLLRASAEVLGSGSFGSSYKATVLCGAVVVKRYKHMNNAGREEFHEYMRRLGRLTHPNLLPLVAYYYRKEEKLLVFDFVDNGSLASHLHGNHNLEEPGLDWGARLKIIKGIARGLCYLYTSLPNIAAPHGHLKSSNVLLDESFEPLLTDYGLIPVANLEHSQTLMMAYKSPEHAQLGRITKKSDVWSLGIVILEMLTGRFPENYLTRNHDIKADLASWVNNMIKEKKTAQVFDAELGRARESNKGELLKMLKIGLSCCEDDVDRRSDLNEIVKQIEELKEEELKEEELKEEELSDDGVDFSPR 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3106 5176 - CmoCh01G000010.1 Cmo01g00001 373484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00001 634 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 20 616 - -
Cmo01g00001 634 MobiDBLite consensus disorder prediction 614 634 - -
Cmo01g00001 634 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Cmo01g00001 634 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515
Cmo01g00001 634 Gene3D Transferase(Phosphotransferase) domain 1 410 630 - -
Cmo01g00001 634 Coils Coil 596 627 - -
Cmo01g00001 634 Gene3D Phosphorylase Kinase; domain 1 302 409 - -
Cmo01g00001 634 SUPERFAMILY Protein kinase-like (PK-like) 339 610 IPR011009 -
Cmo01g00001 634 MobiDBLite consensus disorder prediction 285 311 - -
Cmo01g00001 634 Pfam Protein tyrosine and serine/threonine kinase 339 606 IPR001245 GO:0004672|GO:0006468
Cmo01g00001 634 ProSiteProfiles Protein kinase domain profile. 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00001 634 Gene3D Ribonuclease Inhibitor 152 242 IPR032675 -
Cmo01g00001 634 SUPERFAMILY L domain-like 35 222 - -
Cmo01g00001 634 Gene3D Ribonuclease Inhibitor 36 151 IPR032675 -
Cmo01g00001 634 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00001 Cmo-Chr1:3106 Cmo11g00333 Cmo-Chr11:1627955 0 dispersed
Cmo01g00001 Cmo-Chr1:3106 Cmo12g01363 Cmo-Chr12:11703610 3.25E-152 wgd
Cmo01g00001 Cmo-Chr1:3106 Cmo14g01203 Cmo-Chr14:10250707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74001 PF07714 PK_Tyr_Ser-Thr 2.00E-28 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00001 - - cmo:103487533 957.207