Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00002 ATGATCAATCTGAGTAGTAGCTCAAGCGATGACTTTACAAGTCTGATTCAAGAGCCACAATCTGTGGAATCGTCATCCCCGGCTGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGATGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGGTGAACGCAGACCTACCGCAATGTCGGATATGCCTTGACACCGGAGGAGAAGATTTAATCGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATTATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATCGTGGCATTCTTGGGTGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCTTGGCTATCATCTTGGTTGGATTACTCTACGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTTTGATTGATCTGGCGGGAGTCGCTTCTTGGTTGGGCACACAGATTTCCTGGTGTAAATGGGCATTCTTCGTGATGACGAGGAAATTGCTTCCCGTGCCGCCAGGCTACCACTTACCCCTGAAGGCCATTTCACATATCCTTTTGGATTTGTATTTCTTTGTGAACGATTCAAATTAG 900 44.78 MINLSSSSSDDFTSLIQEPQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLVNADLPQCRICLDTGGEDLIAPCHCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVLIDLAGVASWLGTQISWCKWAFFVMTRKLLPVPPGYHLPLKAISHILLDLYFFVNDSN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6280 12861 + CmoCh01G000020.1 Cmo01g00002 373485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00002 299 ProSiteProfiles Zinc finger RING-CH-type profile. 55 117 IPR011016 GO:0008270
Cmo01g00002 299 CDD RING_CH-C4HC3_MARCH 63 111 - -
Cmo01g00002 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 116 IPR013083 -
Cmo01g00002 299 MobiDBLite consensus disorder prediction 1 27 - -
Cmo01g00002 299 SUPERFAMILY RING/U-box 59 114 - -
Cmo01g00002 299 PANTHER OS02G0132300 PROTEIN 21 241 - -
Cmo01g00002 299 Pfam RING-variant domain 63 110 IPR011016 GO:0008270
Cmo01g00002 299 SMART ringv_2 62 111 IPR011016 GO:0008270
Cmo01g00002 299 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00002 Cmo-Chr1:6280 Cmo03g00823 Cmo-Chr3:6598502 7.81E-09 dispersed
Cmo01g00002 Cmo-Chr1:6280 Cmo14g01212 Cmo-Chr14:10324732 2.03E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00002 - - cpep:111788515 488.419