Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00002 | ATGATCAATCTGAGTAGTAGCTCAAGCGATGACTTTACAAGTCTGATTCAAGAGCCACAATCTGTGGAATCGTCATCCCCGGCTGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGATGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGGTGAACGCAGACCTACCGCAATGTCGGATATGCCTTGACACCGGAGGAGAAGATTTAATCGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATTATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATCGTGGCATTCTTGGGTGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCTTGGCTATCATCTTGGTTGGATTACTCTACGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTTTGATTGATCTGGCGGGAGTCGCTTCTTGGTTGGGCACACAGATTTCCTGGTGTAAATGGGCATTCTTCGTGATGACGAGGAAATTGCTTCCCGTGCCGCCAGGCTACCACTTACCCCTGAAGGCCATTTCACATATCCTTTTGGATTTGTATTTCTTTGTGAACGATTCAAATTAG | 900 | 44.78 | MINLSSSSSDDFTSLIQEPQSVESSSPAEIIVIGRESSVTDDDLHNLNVDETCHLVNADLPQCRICLDTGGEDLIAPCHCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVLIDLAGVASWLGTQISWCKWAFFVMTRKLLPVPPGYHLPLKAISHILLDLYFFVNDSN | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6280 | 12861 | + | CmoCh01G000020.1 | Cmo01g00002 | 373485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00002 | 299 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 55 | 117 | IPR011016 | GO:0008270 | |
Cmo01g00002 | 299 | CDD | RING_CH-C4HC3_MARCH | 63 | 111 | - | - | |
Cmo01g00002 | 299 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 116 | IPR013083 | - | |
Cmo01g00002 | 299 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cmo01g00002 | 299 | SUPERFAMILY | RING/U-box | 59 | 114 | - | - | |
Cmo01g00002 | 299 | PANTHER | OS02G0132300 PROTEIN | 21 | 241 | - | - | |
Cmo01g00002 | 299 | Pfam | RING-variant domain | 63 | 110 | IPR011016 | GO:0008270 | |
Cmo01g00002 | 299 | SMART | ringv_2 | 62 | 111 | IPR011016 | GO:0008270 | |
Cmo01g00002 | 299 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 21 | 241 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00002 | Cmo-Chr1:6280 | Cmo03g00823 | Cmo-Chr3:6598502 | 7.81E-09 | dispersed | |
Cmo01g00002 | Cmo-Chr1:6280 | Cmo14g01212 | Cmo-Chr14:10324732 | 2.03E-158 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00002 | - | - | cpep:111788515 | 488.419 |