Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00011 ATGGAGCCCTACCATGAAGTTTCAGAAATGCCAGAGCAGATTATACTACGCTGGGACACTGCCGCGCCGGATGAAGTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGATCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGATTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATACCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGGTGTCTTCGAGGACGTGAACGACGACGAAGCGGATTCGCAGGAAGTTCACCTCGATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGAGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACATTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGAAGGTGGATCAGAGCGGCAAAGATTTCCGTTAGGAATCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCAAATCTTCTATGGCATAGGGACCGCCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTCCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCATGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTCGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGAATACCAAGTGGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTTTCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTGTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGAAATTGCGAGACATGATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTGAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGAAGCTTGTCTTCAGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCGGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGAATATGCATTTAAGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCAAAACAAGGTTCCGGACAAGCTTCTGGATCAATCAAGTGTCTCACATCTTTTCCCTATCACAAAGTACCTAG 1932 49.22 MEPYHEVSEMPEQIILRWDTAAPDEVKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHTIPIEVESLTDPSPSACSMSSCTSGVFEDVNDDEADSQEVHLDLSGSPSFGSSGRSSYRRTSSIREIDLIPSEAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISVRNLFSSEKRLCQQIFYGIGTAIEDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFSEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPCLAHFFIMNNVHYIVEKIRGSPKLRDMIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEEYAFKAVKAAGITSIGVRGKDSVCVVTKTRFRTSFWINQVSHIFSLSQST 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36167 39059 - CmoCh01G000110.1 Cmo01g00011 373494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00011 643 Pfam Exo70 exocyst complex subunit 224 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo01g00011 643 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 8 597 - -
Cmo01g00011 643 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 597 IPR004140 GO:0000145|GO:0006887
Cmo01g00011 643 SUPERFAMILY Cullin repeat-like 12 593 IPR016159 -
Cmo01g00011 643 Gene3D Exocyst complex component Exo70 14 599 - -
Cmo01g00011 643 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 594 635 IPR029055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00011 Cmo-Chr1:36167 Cmo13g00835 Cmo-Chr13:7754168 5.05E-148 dispersed
Cmo14g00163 Cmo-Chr14:726507 Cmo01g00011 Cmo-Chr1:36167 7.33E-97 dispersed
Cmo01g00011 Cmo-Chr1:36167 Cmo14g01223 Cmo-Chr14:10395134 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00011 K07195 - csv:101204229 973.77