Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00019 ATGCTTCATTCCATAGGAGCTGCGAGACAAACTTGTAGCTTACTTGCTGTTACCTGTGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATCTGAAATACCCCTTTCCAGAATTGGTCTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCAAGAATGAGTTCGGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTATGTGGACTATTCGATACTGCATTACCAACCACCGTGTACTTAGAACTCCCAAATGGAGGCAAAATAGCGGAGACTCTTCATTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCTGCTCATTTCCGCAATGCATTACTTTCTGTGGTGGAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACGATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTAACATAGAACCGCCTGAGCTAGATGCTGGTGAAGATGAAGATGCTTCTTTAGAAGCCGTCCCTGTTATAAGTGTACATGATAATAATGTGACCATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGCGGCGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCCGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTACTGCCACACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGTCAAGGAATGAGGAATACTCTCTCTCATGACAGTCTCGCCTATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCCCCAATGAATGGGTTTAAGGCACCCTTACTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAAGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAGTGGAGGCCAGCCCAAGGCTAGTTTGCCCGCCGTTACCCCGTCCAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGTTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTGTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2349 43.85 MLHSIGAARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELVSSGRLEVQVLTNPSKNEFGRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLCGLFDTALPTTVYLELPNGGKIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVESSSTHTWDAFQLAHAAFRLHCVGRNYALPGNADDFRSDLEPQLIGEPPKINIEPPELDAGEDEDASLEAVPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPHWFKPPTPSRKRVEPSQGMRNTLSHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMKPIPLVHRNKMKLFSGWTEGDGNSGGQPKASLPAVTPSKHVTVGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHSVANGSPQGITNPRIP 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63358 68585 + CmoCh01G000190.1 Cmo01g00019 373502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00019 782 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Cmo01g00019 782 Gene3D - 592 695 IPR036431 GO:0003677
Cmo01g00019 782 SMART ARID_2 592 695 - -
Cmo01g00019 782 CDD ARID 597 695 - -
Cmo01g00019 782 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Cmo01g00019 782 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Cmo01g00019 782 CDD PHD_ARID4_like 705 756 - -
Cmo01g00019 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 771 IPR042293 -
Cmo01g00019 782 MobiDBLite consensus disorder prediction 549 573 - -
Cmo01g00019 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 765 IPR013083 -
Cmo01g00019 782 MobiDBLite consensus disorder prediction 528 573 - -
Cmo01g00019 782 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00019 Cmo17g00636 CCT
Cmo01g00019 Cmo17g00636 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00019 Cmo-Chr1:63358 Cmo17g00636 Cmo-Chr17:6639372 0 dispersed
Cmo01g00019 Cmo-Chr1:63358 Cmo14g01244 Cmo-Chr14:10511944 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8990 PF01388 ARID 3.90E-14 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00019 - - csv:101215769 1397.88