Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00019 ATGCTTCATTCCATAGGAGCTGCGAGACAAACTTGTAGCTTACTTGCTGTTACCTGTGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATCTGAAATACCCCTTTCCAGAATTGGTCTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCAAGAATGAGTTCGGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTATGTGGACTATTCGATACTGCATTACCAACCACCGTGTACTTAGAACTCCCAAATGGAGGCAAAATAGCGGAGACTCTTCATTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCTGCTCATTTCCGCAATGCATTACTTTCTGTGGTGGAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACGATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTAACATAGAACCGCCTGAGCTAGATGCTGGTGAAGATGAAGATGCTTCTTTAGAAGCCGTCCCTGTTATAAGTGTACATGATAATAATGTGACCATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGCGGCGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCCGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTACTGCCACACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGTCAAGGAATGAGGAATACTCTCTCTCATGACAGTCTCGCCTATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCCCCAATGAATGGGTTTAAGGCACCCTTACTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAAGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAGTGGAGGCCAGCCCAAGGCTAGTTTGCCCGCCGTTACCCCGTCCAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGTTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTGTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2349 43.85 MLHSIGAARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELVSSGRLEVQVLTNPSKNEFGRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLCGLFDTALPTTVYLELPNGGKIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVESSSTHTWDAFQLAHAAFRLHCVGRNYALPGNADDFRSDLEPQLIGEPPKINIEPPELDAGEDEDASLEAVPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPHWFKPPTPSRKRVEPSQGMRNTLSHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMKPIPLVHRNKMKLFSGWTEGDGNSGGQPKASLPAVTPSKHVTVGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHSVANGSPQGITNPRIP 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63358 68585 + CmoCh01G000190.1 Cmo01g00019 373502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00019 782 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Cmo01g00019 782 Gene3D - 592 695 IPR036431 GO:0003677
Cmo01g00019 782 SMART ARID_2 592 695 - -
Cmo01g00019 782 CDD ARID 597 695 - -
Cmo01g00019 782 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Cmo01g00019 782 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Cmo01g00019 782 CDD PHD_ARID4_like 705 756 - -
Cmo01g00019 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 771 IPR042293 -
Cmo01g00019 782 MobiDBLite consensus disorder prediction 549 573 - -
Cmo01g00019 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 765 IPR013083 -
Cmo01g00019 782 MobiDBLite consensus disorder prediction 528 573 - -
Cmo01g00019 782 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00019 - - - csv:101215769 1397.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00019 Cmo17g00636 CCT
Cmo01g00019 Cmo17g00636 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00019 Cmo-Chr1:63358 Cmo17g00636 Cmo-Chr17:6639372 0 dispersed
Cmo01g00019 Cmo-Chr1:63358 Cmo14g01244 Cmo-Chr14:10511944 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00098 . 1 358 ARID Transcription Factor Family AT1G04880 56.5 7.3e-106 381.7
Cmo08g00997 . 45 384 ARID Transcription Factor Family AT1G04880 59.7 5.8e-103 372.1
Cmo06g00165 . 1576 1847 ARID Transcription Factor Family AT1G20910 59.7 1.0e-87 321.2
Cmo01g02101 . 144 452 ARID Transcription Factor Family AT1G20910 53.4 9.0e-76 281.6
Cmo09g00078 CST 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.2e-113 407.1
Cmo01g02054 CST 16 363 ARID Transcription Factor Family AT1G76110 58.4 2.5e-106 382.9
Cmo06g00165 . 1567 1876 ARID Transcription Factor Family AT1G76510 60.3 1.9e-103 373.6
Cmo01g02101 . 143 482 ARID Transcription Factor Family AT1G76510 58.8 1.5e-95 347.4
Cmo01g00019 CCT,ECH 1 771 ARID Transcription Factor Family AT3G43240 59.1 6.0e-262 901.0
Cmo14g01244 . 1 781 ARID Transcription Factor Family AT3G43240 58.2 3.6e-259 891.7
Cmo17g00636 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.6 5.1e-253 871.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8990 PF01388 ARID 3.90E-14 CL0123 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00019 Cmo_Chr01 FPKM 3.084445 3.047966 0.605118 3.733071 7.568636 11.055445 4.874712 2.12564 0.594218 2.477867