Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00025 ATGGGGGTGGATCAAACAAGTATCTTTCCTTCTGTCTGGCCTTTGCCGACTGTGGTCACCCAAGTATTTATTTTTAAGCAACCGAATCAACCTATACGATCCAATCTAGTGGGACCCGATTGTTTCTTGTCTTACTCTCGCCTTCTTCCTTTTGAGGTTGGTATCTCAGCTCCATTTCAGGAGTTCTTAATCATTTTGCAGCTGGGATTCGACCTGGATATCCTCGTTGCGTCACTTCAAGTTCATCTCCAGTCTGCACATATGGGATCGATAGAGGAGGGAACAAATTACCTATCTGACGAAGATATTCCATTGAAGGGAACACCAGTTGCGAAAAACTTATCGCATAGCTTTGACTGTGAGACGGTTCATGTGCGTTCCTCCCCAGATGATAAAAGATGGTGGAAGACTAACAACATTCGTTTTAGACCTCTTGAAAGTGCTAAAATAGTGTTGATTAAAGCAAAGATCAACGTGTTACTTCCGTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGGTTTGGTCTTCTTTTTCACGTTACTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCTACAGAGCAGCTTGCTTCCTATACTGGTCCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCGATTTATGCATTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCGTTATTGGGATCAATCTTGTCGAATATGCTCCTAGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAATGTGCAGACTTTCAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTAATGGCTGTTATGGGAACAACGTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGGTTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTTCCTTTTCTTTCAACTAAAAAGTCAGCACAATCTCTATGGTTCTCTTGATGAGGAAGGTGATGGTGAAGTTGAGGAGGATCCTGAGATTTATGCTTGGGAAGCAATTGGGTGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCTGGATACCTTGTTGATGCTATCGAGGGAGCATCTGAATCATTACATTTGCCAGTGGCTTTTATAAGTGTAATTTTGTTGCCAATAGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCAACACAAATATCCATGTTTGTGATCCCATTTTGCGTCGTTGTTGGATGGTGTATGGGAATACCAATGGACTTGAACTTTAAACTCTTTGAGACTGCAACTCTGTTTATAACTGTGCTAGTGGTGGCCTTTATGTTGCAGGAGGGGACGTCAAATTATTTCAAAGGTCTAATGCTTATTCTATGCTACCTCATTGTGGCAGCCAGCTTCTTTGTACATGTTGACCCTAGCAGTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCAACACAAATATCCATGTTTGTGATCCCATTTTGCGTCGTTGTTGGATGGTGTATGGGAATACCAATGGACTTGAACTTTAAACTCTTTGAGACTGCAACTCTGTTTATAACTGTGCTAGTGGTGGCCTTTATGTTGCAGCCAGCTTCTTTGTACATGTTGACCCTAGCAGTGATGATGATTAACCCTGGAAGCAAGTTGGTCCTGGAACTTTACTGCAAGCTGAAGTTCTGCATTGCATTAATCCTCAAACCACCACTGCTTCACTTCGTTGGAAGCTGCAGACATCAGATGGAGTTTGGTTTCGTTAGTTGA 1941 41.73 MGVDQTSIFPSVWPLPTVVTQVFIFKQPNQPIRSNLVGPDCFLSYSRLLPFEVGISAPFQEFLIILQLGFDLDILVASLQVHLQSAHMGSIEEGTNYLSDEDIPLKGTPVAKNLSHSFDCETVHVRSSPDDKRWWKTNNIRFRPLESAKIVLIKAKINVLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKNVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASFLFFQLKSQHNLYGSLDEEGDGEVEEDPEIYAWEAIGWLAILTVWVSILSGYLVDAIEGASESLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGIPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSSVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGIPMDLNFKLFETATLFITVLVVAFMLQPASLYMLTLAVMMINPGSKLVLELYCKLKFCIALILKPPLLHFVGSCRHQMEFGFVS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 90228 96753 - CmoCh01G000250.1 Cmo01g00025 373508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00025 646 TIGRFAM cax: calcium/proton exchanger 160 506 IPR004798 GO:0006816|GO:0015369
Cmo01g00025 646 PANTHER VACUOLAR CATION/PROTON EXCHANGER 92 512 - -
Cmo01g00025 646 PANTHER VACUOLAR CATION/PROTON EXCHANGER 514 592 - -
Cmo01g00025 646 TIGRFAM caca2: calcium/proton exchanger 147 506 - -
Cmo01g00025 646 Gene3D - 208 347 IPR044880 -
Cmo01g00025 646 Gene3D - 352 508 IPR044880 -
Cmo01g00025 646 Gene3D - 512 604 IPR044880 -
Cmo01g00025 646 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 514 592 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo01g00025 646 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 92 512 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo01g00025 646 Pfam Sodium/calcium exchanger protein 179 334 IPR004837 GO:0016021|GO:0055085
Cmo01g00025 646 Pfam Sodium/calcium exchanger protein 514 590 IPR004837 GO:0016021|GO:0055085
Cmo01g00025 646 Pfam Sodium/calcium exchanger protein 364 503 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00025 Cmo-Chr1:90228 Cmo20g00692 Cmo-Chr20:3416859 9.07E-35 dispersed
Cmo01g00025 Cmo-Chr1:90228 Cmo14g01257 Cmo-Chr14:10577187 8.54E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00025 K07300 - csv:101219432 761.14