Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00026 ATGAGACCGCTTCAGCCGCCGCAGGGTGTAAATCCGGCCACCGATCGTCCTCGTCGCCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCTGTTCCCCTCCCTTTGCCTCCGACGTCTTCTAACGCCGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGCCTCAGCCGCAGAAGCATCAGGTTTTCAGCCTCGCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTCTACAAAGTGATTCACCGTCCCACCGCCCGCGTCTATGCTCTGAAGGTCATTTATGGAAACCACGAGGACGCGGTTAGGCTTCAGATGTGCCGTGAGGTTGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTCCTTGAATACATGGATCGAGGCTCCCTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCTTATCTCCATAGCCGCCGCATCGTACATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCCGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGTTTTGGGGTTAGCATATTGGAATTCTACCTCGGACGGTTTCCTCTTGCCGTGGAGAGGCCTGGGGACTGGGCGAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACCGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCACTACTGGAACATGCGTTCATAGCGGGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAAACTCATCACCAGAATCTTCGTCAACTATTACCTCCGCCGCCCCTTCGTCCTTCCAGCCTTTCTTGA 1110 54.77 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNAAPPPSTSQLHNGNRPPEPQPQKHQVFSLADFERVSRIGSGCGGTVYKVIHRPTARVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFIAGKNGAASQYQNQQTHHQNLRQLLPPPPLRPSSLS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 97615 98724 - CmoCh01G000260.1 Cmo01g00026 373509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00026 369 Pfam Protein kinase domain 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00026 369 ProSiteProfiles Protein kinase domain profile. 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00026 369 CDD PKc_MAPKK_plant_like 77 336 - -
Cmo01g00026 369 MobiDBLite consensus disorder prediction 50 68 - -
Cmo01g00026 369 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Cmo01g00026 369 Gene3D Phosphorylase Kinase; domain 1 56 158 - -
Cmo01g00026 369 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 357 - -
Cmo01g00026 369 Gene3D Transferase(Phosphotransferase) domain 1 161 359 - -
Cmo01g00026 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cmo01g00026 369 MobiDBLite consensus disorder prediction 1 71 - -
Cmo01g00026 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 357 - -
Cmo01g00026 369 MobiDBLite consensus disorder prediction 344 369 - -
Cmo01g00026 369 SMART serkin_6 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00026 369 SUPERFAMILY Protein kinase-like (PK-like) 77 353 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00026 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 637.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00026 Cmo-Chr1:97615 Cmo11g00726 Cmo-Chr11:3514026 7.45E-69 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo01g00026 Cmo-Chr1:97615 2.33E-107 transposed
Cmo01g00026 Cmo-Chr1:97615 Cmo12g01353 Cmo-Chr12:11669407 2.69E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00767 CST 28 357 MAP Kinase Kinase Gene Family AT4G26070 69.7 4.1e-133 471.9
Cmo11g00726 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 68.1 1.9e-130 463.0
Cmo12g01353 . 27 363 MAP Kinase Kinase Gene Family AT4G26070 63.6 1.7e-118 423.3
Cmo05g01376 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.6e-107 384.8
Cmo10g00767 CST 1 330 MAP Kinase Kinase Gene Family AT4G29810 68.1 1.1e-130 463.8
Cmo11g00726 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 67.5 1.4e-130 463.4
Cmo05g01376 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 4.1e-109 392.1
Cmo12g01353 . 1 322 MAP Kinase Kinase Gene Family AT4G29810 61.0 2.6e-108 389.4
Cmo12g01310 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 52.1 4.8e-94 342.0
Cmo14g00685 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 80.1 6.9e-230 793.9
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 69.1 3.5e-130 462.2
Cmo13g01011 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 2.1e-82 303.5
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 69.6 1.1e-130 463.8
Cmo13g01011 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.4e-83 307.4
Cmo05g01376 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 1.4e-168 589.7
Cmo12g01310 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 70.5 5.2e-147 518.1
Cmo10g00767 CST 7 356 MAP Kinase Kinase Gene Family AT5G56580 58.4 4.7e-116 415.2
Cmo11g00726 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-115 413.7
Cmo12g01353 . 1 352 MAP Kinase Kinase Gene Family AT5G56580 52.8 9.0e-99 357.8
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.5e-107 385.6
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G18350 52.5 1.6e-75 280.4
Cmo13g01011 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.9e-79 292.7
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.9e-113 406.4
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.3e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74003 PF00069 Pkinase 5.30E-60 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00026 Cmo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.255218 0.667416 0.335215 0.0 0.0 0.0