Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00038 ATGAATTCAGGTCCAAAGCCCTGCGTCTCTCCTTTCACACCAACTCAATGGCAAGAACTAGAACACCAAGCTCTCATATTCAAATACATGGTTTCAGGAGTACCTATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGATGCTTTGAGATGGGTTTTGGCAGAAAAGCAGATCCTGAACCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACGCCACCAGCTCAAACGCCACCGCCTTTAATCCTCACTTCAACCCGGAGCCTCTCTGCTTCCTCCCCAACCTCCTCTTCCTATTCTCTCTCTACACTTTCCTCTTCTTCTTCTCTGACATGTGAAACTCAGTCCTATCACCAAGCTCCTGCTCCTGCTCCTGCCCCTGCTCCTGCTGCTTATCAGGAATCCTCCATTCATCCATATTTGTATCCTCAATCATCATCCTCCAGACCTCCATGTTCTGATTTCTCTCCAAACAGTACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATCCTCAAGCTGACAAAGACTACAGGGATATTAATGGTCCAAGAGAGGGTGTGGGCGTGCAGGCGTTCTTTCCCTCAGTTGCAGACTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATTCTCCCATGCTGTTTCCAACAGCCACCAAATTTACAGTTCGAAACAGGCGAGGCAACAACAAGAGCAACACTGCTTTGTTTTGGGCACAGATTTTAATAAATCAACAAGATCAGCTAAAACAGAGGAAGAAGATGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCACAAATTCAAGATTCTCAAGAGAGATTTTCTGTCCTTCGCTTTTCTTCGATATTTCTTTTTTCCACTTGCTGTCTCTTTCTAGTACGAGTCGTCAAAGGGACAGAGAAAGGCAACACACAGTACATGTTCGGATTGGACATTACTTGAATGAATCCATCCAAGCTTCACCTGCAGCCAAAGGTAACACTATTGATGCTGGTGGTTTTCTTTTCTGTTCCAGGGTATCAATCAATTTCACAGATTCAGTTCCTCACAATCTCAGCTTGGATGGGTAA 1302 45.16 MNSGPKPCVSPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPAQTPPPLILTSTRSLSASSPTSSSYSLSTLSSSSSLTCETQSYHQAPAPAPAPAPAAYQESSIHPYLYPQSSSSRPPCSDFSPNSTNPQLFLYSGTHPQADKDYRDINGPREGVGVQAFFPSVADSARSIGEVYSQPIGMDSYKGFSHAVSNSHQIYSSKQARQQQEQHCFVLGTDFNKSTRSAKTEEEDDAETQKPLLHFFEDCPPKNSDSWLDLATNSRFSREIFCPSLFFDISFFHLLSLSSTSRQRDRERQHTVHVRIGHYLNESIQASPAAKGNTIDAGGFLFCSRVSINFTDSVPHNLSLDG 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 125736 128232 + CmoCh01G000380.1 Cmo01g00038 373521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00038 433 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo01g00038 433 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo01g00038 433 PANTHER - 10 348 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo01g00038 433 Pfam WRC 77 119 IPR014977 -
Cmo01g00038 433 MobiDBLite consensus disorder prediction 191 214 - -
Cmo01g00038 433 PANTHER GROWTH-REGULATING FACTOR 5 10 348 - -
Cmo01g00038 433 MobiDBLite consensus disorder prediction 132 151 - -
Cmo01g00038 433 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cmo01g00038 433 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo01g00038 433 MobiDBLite consensus disorder prediction 103 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00038 Cmo14g01265 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00038 Cmo-Chr1:125736 Cmo10g00789 Cmo-Chr10:3672292 4.76E-65 dispersed
Cmo03g00937 Cmo-Chr3:7100940 Cmo01g00038 Cmo-Chr1:125736 2.62E-38 dispersed
Cmo14g02051 Cmo-Chr14:14984739 Cmo01g00038 Cmo-Chr1:125736 5.25E-12 dispersed
Cmo01g00038 Cmo-Chr1:125736 Cmo11g00738 Cmo-Chr11:3593611 1.28E-66 wgd
Cmo01g00038 Cmo-Chr1:125736 Cmo14g01265 Cmo-Chr14:10619218 4.26E-175 wgd
Cmo01g00038 Cmo-Chr1:125736 Cmo05g01417 Cmo-Chr5:10884190 1.67E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8991 PF08879 WRC 2.50E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00038 - - cmos:111452139 657.907