Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00043 ATGAGTAATTGGTTGGGTTTCTCTCTCACTCCCCACCTCAAAATCCATGACGCCACCTCCGCCGACGACCAACACCCAAACCCCAGCAGCTTCCCGCCTCTCATGCCTCTCCGCTCCGACGGATCCCTCTGTATCGCCGCCGCACACGATTGGAGGTCGTACGAGAATGAAATGGGTGCAAGGAATGAAGAGGAAAGTCCAAAGCTTGAGGATTTTTTGGGGAATTGTTATTCAAACTCACCGCCAAACGATCAGACTCATAATAACAACACCAACTTCATCCAGGCGAATACCAATAATAATTACCATTATCAGACGGATCATCACTCTTTAATTTCTAATAATGGTAATGCAATTTACAAGTCGTGGTTAGGTCCTACGACTTCGAGTCCCCAAAACGAGTGTGGGTTTCGATCTTTATCTCTTGGGATGAGCCCCAACTCGCATAACGACATCGTTTCATTGCCATCGCCGCCGCACGTGGCGGTGGATTCCCGGAAACGACCGATGCCGGTAGGGAAGCCTCCGGTTAAAGAACCTGTTCCTAGGAAGTCCATTGATACTTTTGGACAAAGAACCTCCCAGTTTCGTGGCGTTACGAGGTACCCTTACATAGATGGACAGGGAGATATGAAGCCCATTTGTGGGACAACAGCTGCAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGCGTTTTAAGCCACAATTTTGGAGCAATAAACTAACGATTGTTTTGATGTTTTTTTGTGCAAAAATTCTTGGTCGGATGTCTGGTTTGGTGGCATCAATCAAATATCCGATTATGCAGTTTATCTTGGTAGGTGGTTACGATAAGGAAGAAAAAGCAGCACGAGCGTATGATTTAGCTGCACTTAAGTATTGGGGTCCAACCACACACATAAATTTTTCATTGAGCACTTACGAAAACGAGTTGGAAGAGATGAAGAACATGACCCGACAGGAGTTCGTAGCCAACTTGAGAAGTCGAGTTCTCGACGGAGCATCGTCGAGGCATCTTGTTGGATTGGGATGCGATTTGAAGGTTCCTTTTGTGTGTGTGTGTGTGTGTGTGAACAGGAAAAGCAGTGGATTCTCAAGAGGTGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGGAGGGTTGCAGGAAACAAGGATTTGTACCTTGGCACATTTAGTACACAAGAGGAGGCGGCGGAGGCCTATGACATAGCGGCCATCAAGTTCCGAGGGACGAGTGCAGTAACTAATTTCGACATTAGTAGGTATGACGTGAAGAGGATTTGTTCTAGCTCGACTCTTATTGCGAGTGACCTTGCGAAACGTTCGCCGTTGAAAGATGGAATTCCGTCGACGGCTGAGGAGTATAGTGCATGTGCTTCGCCAACGTCGTCGCAGCCTCTCTTGGCCATCACTGAGAATGGCGACGTCGATGAGAGCCAGCAGGAGTTGGTTGATATGGTTTGGTGCGACAATGGTGGCAAAGATGACAATAATCAACAAGAGGAGAATGTGGCAAAGAATTTGATGGGTTCGAGGAATGAGACAGAGGCATCGAAGTGTTGTATGGTGCAGAACAACGGAGAGTTTGGGGTCGGGGTTGGGGGAGGCGAGTATTCACAAGGGTATTACTCAATGGAGGAAGCAAAATATGAAGATGGGAGGGATGAAAATAGGGAGGTGGAGAATGATGTAACATTGGCTCATCATCAGGTTCCAATGTTTGCTCTATGGAATGAATGA 1773 47.04 MSNWLGFSLTPHLKIHDATSADDQHPNPSSFPPLMPLRSDGSLCIAAAHDWRSYENEMGARNEEESPKLEDFLGNCYSNSPPNDQTHNNNTNFIQANTNNNYHYQTDHHSLISNNGNAIYKSWLGPTTSSPQNECGFRSLSLGMSPNSHNDIVSLPSPPHVAVDSRKRPMPVGKPPVKEPVPRKSIDTFGQRTSQFRGVTRYPYIDGQGDMKPICGTTAAEKRAKQGREGKRFKPQFWSNKLTIVLMFFCAKILGRMSGLVASIKYPIMQFILVGGYDKEEKAARAYDLAALKYWGPTTHINFSLSTYENELEEMKNMTRQEFVANLRSRVLDGASSRHLVGLGCDLKVPFVCVCVCVNRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGIPSTAEEYSACASPTSSQPLLAITENGDVDESQQELVDMVWCDNGGKDDNNQQEENVAKNLMGSRNETEASKCCMVQNNGEFGVGVGGGEYSQGYYSMEEAKYEDGRDENREVENDVTLAHHQVPMFALWNE 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 133673 136770 - CmoCh01G000430.1 Cmo01g00043 373526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00043 590 Gene3D AP2/ERF domain 224 306 IPR036955 GO:0003700|GO:0006355
Cmo01g00043 590 Gene3D AP2/ERF domain 371 431 IPR036955 GO:0003700|GO:0006355
Cmo01g00043 590 MobiDBLite consensus disorder prediction 156 184 - -
Cmo01g00043 590 CDD AP2 370 431 IPR001471 GO:0003700|GO:0006355
Cmo01g00043 590 PANTHER PUTATIVE, EXPRESSED-RELATED 30 537 - -
Cmo01g00043 590 ProSiteProfiles AP2/ERF domain profile. 195 304 IPR001471 GO:0003700|GO:0006355
Cmo01g00043 590 ProSiteProfiles AP2/ERF domain profile. 371 429 IPR001471 GO:0003700|GO:0006355
Cmo01g00043 590 Coils Coil 554 574 - -
Cmo01g00043 590 SUPERFAMILY DNA-binding domain 271 306 IPR016177 GO:0003677
Cmo01g00043 590 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 537 - -
Cmo01g00043 590 SUPERFAMILY DNA-binding domain 370 431 IPR016177 GO:0003677
Cmo01g00043 590 SMART rav1_2 371 435 IPR001471 GO:0003700|GO:0006355
Cmo01g00043 590 SMART rav1_2 252 310 IPR001471 GO:0003700|GO:0006355
Cmo01g00043 590 Pfam AP2 domain 372 421 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00043 Cmo-Chr1:133673 Cmo01g01825 Cmo-Chr1:13364902 6.91E-90 dispersed
Cmo01g00043 Cmo-Chr1:133673 Cmo05g00125 Cmo-Chr5:542544 2.22E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8992 PF00847 AP2 7.00E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00043 K09285 - csv:101205762 649.432