Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00057 ATGGCGGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTTTGACTCTAAGATGAATGAGTTACTTTCAGCTGATGGACAAGATTTCTTCACCTCTTATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAAGCGCAGTCTGGTACGGGAAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAGCTTGATTACGGTCTCGTGCAATGCCAGGCTCTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTGGGAGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCCGACTGCATTCGAATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCACGTGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGGGTCTTCTCTGCTACAATGCCACCTGAAGCTCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTAAGAATTCTCGTAAAGCGCGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAACTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTCATCTTTGTTAATACTCGTCGTAAAGTGGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACGGTTTCGGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGCGAGTTCCGTTCAGGCTCTTCTAGAGTCCTCATTACTACCGATCTATTGGCCCGTGGTATTGATGTGCAGCAGGTTTCTCTAGTTATTAACTATGATCTGCCAACACAACCAGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTTGTAACTAATGAGGACGAAAGAATGTTATTTGACATTCAGAAGTTTTACAACGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA 1242 45.33 MAGLAPEGSQFDARQFDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNEDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 200325 205295 - CmoCh01G000570.1 Cmo01g00057 373540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00057 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cmo01g00057 413 Gene3D - 249 413 IPR027417 -
Cmo01g00057 413 Gene3D - 30 248 IPR027417 -
Cmo01g00057 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Cmo01g00057 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Cmo01g00057 413 CDD DEADc_EIF4A 45 242 - -
Cmo01g00057 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cmo01g00057 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cmo01g00057 413 CDD SF2_C_DEAD 253 383 - -
Cmo01g00057 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Cmo01g00057 413 PANTHER RNA HELICASE 23 413 - -
Cmo01g00057 413 SMART ultradead3 59 256 IPR014001 -
Cmo01g00057 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Cmo01g00057 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cmo01g00057 413 SMART helicmild6 293 374 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00057 Cmo08g00750 CCT
Cmo01g00057 Cmo14g01286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00057 Cmo-Chr1:200325 Cmo05g00440 Cmo-Chr5:2056656 0 dispersed
Cmo14g00243 Cmo-Chr14:1115222 Cmo01g00057 Cmo-Chr1:200325 2.99E-65 dispersed
Cmo01g00057 Cmo-Chr1:200325 Cmo14g01286 Cmo-Chr14:10771250 0 wgd
Cmo01g00057 Cmo-Chr1:200325 Cmo17g00686 Cmo-Chr17:7014859 0 wgd
Cmo01g00057 Cmo-Chr1:200325 Cmo08g00750 Cmo-Chr8:4741661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00057 K03257 - csv:101223055 811.601