Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00058 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAGGAAGAGGCACTTTTGGCTGGCGTACAGAAGCACGGTCCAGGGAAGTGGAAGAACATTCTCAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATCTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCCAGGACTCCCAAAGCTAAAGCTATTGTTGCTGCCTCAGTTTCTAACAACCAAAACTCTGCTCTTACTAAGTTTAATGCATCTGCTGATGCTGCAGGAGAAGATCCACCAAACAGCGCCCCACAGGATGGGAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCTCTTTCAACCATAAAAGATTCAAATGGATGCGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCGGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATAGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTATGAAAAATGTTCTCGTGGGGAAATTGTTCTCTTGGCTTAG 837 44.09 MGNQKQKWTQEEEEALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRTPKAKAIVAASVSNNQNSALTKFNASADAAGEDPPNSAPQDGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKCSRGEIVLLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 205931 209302 - CmoCh01G000580.1 Cmo01g00058 373541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00058 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cmo01g00058 278 Gene3D - 8 87 - -
Cmo01g00058 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo01g00058 278 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Cmo01g00058 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmo01g00058 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cmo01g00058 278 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo01g00058 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmo01g00058 278 SMART sant 4 59 IPR001005 -
Cmo01g00058 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo01g00058 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Cmo01g00058 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Cmo01g00058 278 Gene3D - 111 198 IPR036388 -
Cmo01g00058 278 CDD SANT_TRF 6 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00058 K09422 MYBP; transcription factor MYB, plant - csv:101202785 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00058 Cmo-Chr1:205931 Cmo16g00332 Cmo-Chr16:1518183 1.19E-35 dispersed
Cmo01g00058 Cmo-Chr1:205931 Cmo14g01287 Cmo-Chr14:10777356 1.60E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00332 CST 1 325 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.6e-75 279.6
Cmo04g00473 CST 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 55.4 4.5e-67 252.3
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 3.0e-63 239.6
Cmo07g00654 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.6 5.3e-60 228.8
Cmo07g00654 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 53.7 2.6e-67 253.1
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 3.2e-65 246.1
Cmo07g00654 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 3.7e-58 222.6
Cmo03g00951 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Cmo01g00058 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 1.4e-70 263.8
Cmo14g01287 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 7.9e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8994 PF00538 Linker_histone 1.10E-10 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00058 Cmo_Chr01 FPKM 5.604121 5.117375 6.403581 5.793255 9.2466 8.287652 8.885498 7.783775 6.685362 6.478018