Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00060 ATGATGGAAGAGATGCCTTCTTCGGTTTCTTTGACCCTTAGTTTAGGCAATCCAAAGTCTGATACATCAGGAAGTCCTAGCCATGTCGAATTTACGCGGCTAAAGTTGGTGACAGACAAGGTAAATTTGTTCTCTGCATCGACCGCTGACTCGGGTCCTATTAGTAATGGTAGTTGCCATGGTTTTAGTGGTATAGTCGATAGCATAACCGTGTCGCAACCAAGTGATAGTAGTCAAGGTCGAGATGGTTTTTGGGGGTTGTTGCCAACGAATGGCGTAAGTTTGACTGTCGATAAGGAAGATGCTACCTTATCTTCTATGGGTGACCCTGATGAAATGATAGATGATGGGCTGTTTGCTATTGATGGTGGTTCTAATCTTAATGTACAAGAAGTTGTCAAGATTGGAGATGTGAGTAATGGTCATGTTGTTGCCAAGGCTATTATCTTGGTGGAATCAGGGAAGATTCCTACTAGTGAACTTATTGTGGCAACGGTAAGCTCTGATTTAGAAGTATCGACATCGTCAGAGCTAAAAGCCCCTGCGGTGGTTTTCCAATCGAAAGGGGGGGATGGTGTTCATAAAGGCATTCGGAGTGTCTTTGAGCGGGATTGTGTACCCCTTTGGGGGTCGGTATCGATTTGCGGTAGAAGACCAGAAATGGAGGATGCAATTGCTGTGGTTCCTTGTTTTTCTAAGGTTCCTATCAGAATGCTTGTGGGAAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGCGGCTCTCAGGTTGCAGATTATTGTCGAGAGCGCGTACACTTAGCATTAGCTGAAGAGATTAAAGGATTTAAGCAAAATCTAAATAATGGAAGCAATGGAGAAAACTGGGAGAAGGATTGGGAGAGAACCTTTAACAATTGCTTTGTTAGAGTGGATGATGAAATAGAAGGAAAAGTTGGTAGCTTCAAACCTGTTGCCCCGGAAACTGTTGGCTCTACTGCCGTTGTTGCCTTGGTCTGCTCATCACACATCATAGTTGCAAACTGTGGTGATTCTAGAGCTGTTCTATGCCGTGGCAAAGAACCGATGGCGCTATCGGTCGATCATAAACCAAATCGTGAAGATGAATACGCTCGGATTGAATCATCTGGAGGCAAGGTCATCCAGTGGAATGGACATCGTGTGTTCGGAGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCATGGATCATTCCCAACCCGGAAGTCATGTTTGTTCCTCGAGCGAAAGGAGATGAATGTCTTATTTTAGCCAGTGATGGCCTGTGGGATGTGATGACAAATGAGGAAGTCTGCGAAGTGGCTCGAAGGCGGATTCTTCTTTGGCACAAGAAACACGGAGCTTCATCGCTCACGGATCGGGGCATGGGAGTTGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTAGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCATGA 1560 44.74 MMEEMPSSVSLTLSLGNPKSDTSGSPSHVEFTRLKLVTDKVNLFSASTADSGPISNGSCHGFSGIVDSITVSQPSDSSQGRDGFWGLLPTNGVSLTVDKEDATLSSMGDPDEMIDDGLFAIDGGSNLNVQEVVKIGDVSNGHVVAKAIILVESGKIPTSELIVATVSSDLEVSTSSELKAPAVVFQSKGGDGVHKGIRSVFERDCVPLWGSVSICGRRPEMEDAIAVVPCFSKVPIRMLVGNGMGQSLTHLNSHFFGVYDGHGGSQVADYCRERVHLALAEEIKGFKQNLNNGSNGENWEKDWERTFNNCFVRVDDEIEGKVGSFKPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPNPEVMFVPRAKGDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGASSLTDRGMGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 218493 221645 + CmoCh01G000600.1 Cmo01g00060 373543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00060 519 PANTHER PROTEIN PHOSPHATASE 2C 16 109 519 - -
Cmo01g00060 519 Pfam Protein phosphatase 2C 232 502 IPR001932 -
Cmo01g00060 519 Gene3D - 195 519 IPR036457 -
Cmo01g00060 519 ProSiteProfiles PPM-type phosphatase domain profile. 208 509 IPR001932 -
Cmo01g00060 519 SMART PP2C_4 198 507 IPR001932 -
Cmo01g00060 519 MobiDBLite consensus disorder prediction 7 27 - -
Cmo01g00060 519 ProSitePatterns PPM-type phosphatase domain signature. 255 263 IPR000222 GO:0043169
Cmo01g00060 519 MobiDBLite consensus disorder prediction 1 27 - -
Cmo01g00060 519 SUPERFAMILY PP2C-like 201 510 IPR036457 -
Cmo01g00060 519 PANTHER ALPHABET, ISOFORM E-RELATED 109 519 - -
Cmo01g00060 519 CDD PP2Cc 210 509 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00060 Cmo14g01289 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00060 Cmo-Chr1:218493 Cmo05g00437 Cmo-Chr5:2039564 5.01E-178 dispersed
Cmo15g00113 Cmo-Chr15:542388 Cmo01g00060 Cmo-Chr1:218493 1.74E-78 transposed
Cmo16g00068 Cmo-Chr16:309222 Cmo01g00060 Cmo-Chr1:218493 5.12E-74 transposed
Cmo01g00060 Cmo-Chr1:218493 Cmo14g01289 Cmo-Chr14:10793271 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00060 K14497 - csv:101203499 914.835