Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00064 ATGATCAAAAGTTTGTTGTTTCAAGCTCAAGCTATGGAGGAAAATTTGTCCAATTTAACTTCAGCTTCAGGTGAAGCTAGTTCCTGCTCCGGCAACCGTTCCGATCAGATTCCGACCAACTACTCCGGTGGCAATTACTTTTCTGCCCCTCCACCACCACCACCAAAAAGGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAGGTGGTAGCTTTATCACCGAAGACGCTGATGGCGACGAATAGATTCGTATGCGAGATCTGCAGCAAAGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCACAATTTGCCATGGAAGCTGAAGCCAAGAGCGAACAAAGAGGCGATAAGGAAGAAGGTGTATGTGTGCCCAGAAACAAGCTGTGTTCATCATGATCCATCGAGGGCTCTCGGGGACTTGACAGGAATCAAGAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAAGCATTACAGCAAACCCAGTACTTATGACCAATAATAACCCTCCACTACTTCCCAATCCCATATCTTCAATCTCTCACTTGAACTTCCAACCTCAAACCCACTTCAACCCATTGGACATCAACTCGTTTGCCCTCAAAAAAGAGCACCAAAATCCACAAAGCTCAACCAATTTCATTCCCCCGTGGTTGGCTAATCATAATCAAGACCTTAATCCCCTCATCATTAACCCTAATCATCTTGGGCAGACTTCTCTTAATCTTCCAACTGCTTCTTCTTCCCCTTCTCCGCACATGTCAGCCACAGCACTTCTGCAGAAAGCAGCTCAAATGGGAGCTACGATGAGCAGCAACAATAATGCAGAGGCACCACACACAATAATCAGGCCCCAACACTCTCAGGATCATCACGTGTCTGATTCGTCTGCCACCACCAATAATGCAACTTGTAATTTTGGCCTTAACTTGTCCTCCTCCTCCTCCTCACGTGACAACCAGAATCAGGTCTTGATGGGTACTGAAGCTGGTCCAGGCCTTTCTCCTGCACTGCCACTCTACAGGAACAAAACACTCGTTCAAACCACTTTCATGAACAACAACAACAACACCACCTTTTCTCCAAGTGCCTTTGAAGGGGCTTCTTTTGAAATAGATGAATTTGGAGGGATGTTGAAGAAAGATGAGATTTTTAACGACAACCCAGCAAGTGAAGGGTTGAGTACAAGAGACTTTTTGGGGCTTAGAGCAATGTCTCACACTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATCAATGGTGGTGCTGGTCAAACCCCTCAGACTCAAATTCGAAACCAACCCAGCTGGCAAGGTTAG 1521 45.83 MIKSLLFQAQAMEENLSNLTSASGEASSCSGNRSDQIPTNYSGGNYFSAPPPPPPKRKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKPRANKEAIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSITANPVLMTNNNPPLLPNPISSISHLNFQPQTHFNPLDINSFALKKEHQNPQSSTNFIPPWLANHNQDLNPLIINPNHLGQTSLNLPTASSSPSPHMSATALLQKAAQMGATMSSNNNAEAPHTIIRPQHSQDHHVSDSSATTNNATCNFGLNLSSSSSSRDNQNQVLMGTEAGPGLSPALPLYRNKTLVQTTFMNNNNNTTFSPSAFEGASFEIDEFGGMLKKDEIFNDNPASEGLSTRDFLGLRAMSHTEFLSNIAAAGYGNCINGGAGQTPQTQIRNQPSWQG 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 257387 260064 + CmoCh01G000640.1 Cmo01g00064 373547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00064 506 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Cmo01g00064 506 Gene3D Classic Zinc Finger 64 135 - -
Cmo01g00064 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Cmo01g00064 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 475 - -
Cmo01g00064 506 MobiDBLite consensus disorder prediction 21 46 - -
Cmo01g00064 506 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Cmo01g00064 506 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 475 - -
Cmo01g00064 506 MobiDBLite consensus disorder prediction 21 68 - -
Cmo01g00064 506 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cmo01g00064 506 Gene3D Classic Zinc Finger 139 219 - -
Cmo01g00064 506 Coils Coil 2 22 - -
Cmo01g00064 506 SMART c2h2final6 162 182 IPR013087 -
Cmo01g00064 506 SMART c2h2final6 127 157 IPR013087 -
Cmo01g00064 506 SMART c2h2final6 85 107 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00064 Cmo-Chr1:257387 Cmo14g00196 Cmo-Chr14:889620 2.42E-116 dispersed
Cmo02g00202 Cmo-Chr2:947623 Cmo01g00064 Cmo-Chr1:257387 1.13E-108 dispersed
Cmo11g01172 Cmo-Chr11:6772071 Cmo01g00064 Cmo-Chr1:257387 5.72E-103 dispersed
Cmo01g00064 Cmo-Chr1:257387 Cmo14g01296 Cmo-Chr14:10837630 0 wgd
Cmo01g00064 Cmo-Chr1:257387 Cmo17g00694 Cmo-Chr17:7056431 7.72E-125 wgd
Cmo01g00064 Cmo-Chr1:257387 Cmo08g00742 Cmo-Chr8:4706485 2.99E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8995 PF00096 zf-C2H2 0.0088 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00064 K25870 - csv:101204728 610.912