Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00064 | ATGATCAAAAGTTTGTTGTTTCAAGCTCAAGCTATGGAGGAAAATTTGTCCAATTTAACTTCAGCTTCAGGTGAAGCTAGTTCCTGCTCCGGCAACCGTTCCGATCAGATTCCGACCAACTACTCCGGTGGCAATTACTTTTCTGCCCCTCCACCACCACCACCAAAAAGGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAGGTGGTAGCTTTATCACCGAAGACGCTGATGGCGACGAATAGATTCGTATGCGAGATCTGCAGCAAAGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCACAATTTGCCATGGAAGCTGAAGCCAAGAGCGAACAAAGAGGCGATAAGGAAGAAGGTGTATGTGTGCCCAGAAACAAGCTGTGTTCATCATGATCCATCGAGGGCTCTCGGGGACTTGACAGGAATCAAGAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAAGCATTACAGCAAACCCAGTACTTATGACCAATAATAACCCTCCACTACTTCCCAATCCCATATCTTCAATCTCTCACTTGAACTTCCAACCTCAAACCCACTTCAACCCATTGGACATCAACTCGTTTGCCCTCAAAAAAGAGCACCAAAATCCACAAAGCTCAACCAATTTCATTCCCCCGTGGTTGGCTAATCATAATCAAGACCTTAATCCCCTCATCATTAACCCTAATCATCTTGGGCAGACTTCTCTTAATCTTCCAACTGCTTCTTCTTCCCCTTCTCCGCACATGTCAGCCACAGCACTTCTGCAGAAAGCAGCTCAAATGGGAGCTACGATGAGCAGCAACAATAATGCAGAGGCACCACACACAATAATCAGGCCCCAACACTCTCAGGATCATCACGTGTCTGATTCGTCTGCCACCACCAATAATGCAACTTGTAATTTTGGCCTTAACTTGTCCTCCTCCTCCTCCTCACGTGACAACCAGAATCAGGTCTTGATGGGTACTGAAGCTGGTCCAGGCCTTTCTCCTGCACTGCCACTCTACAGGAACAAAACACTCGTTCAAACCACTTTCATGAACAACAACAACAACACCACCTTTTCTCCAAGTGCCTTTGAAGGGGCTTCTTTTGAAATAGATGAATTTGGAGGGATGTTGAAGAAAGATGAGATTTTTAACGACAACCCAGCAAGTGAAGGGTTGAGTACAAGAGACTTTTTGGGGCTTAGAGCAATGTCTCACACTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATCAATGGTGGTGCTGGTCAAACCCCTCAGACTCAAATTCGAAACCAACCCAGCTGGCAAGGTTAG | 1521 | 45.83 | MIKSLLFQAQAMEENLSNLTSASGEASSCSGNRSDQIPTNYSGGNYFSAPPPPPPKRKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKPRANKEAIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSITANPVLMTNNNPPLLPNPISSISHLNFQPQTHFNPLDINSFALKKEHQNPQSSTNFIPPWLANHNQDLNPLIINPNHLGQTSLNLPTASSSPSPHMSATALLQKAAQMGATMSSNNNAEAPHTIIRPQHSQDHHVSDSSATTNNATCNFGLNLSSSSSSRDNQNQVLMGTEAGPGLSPALPLYRNKTLVQTTFMNNNNNTTFSPSAFEGASFEIDEFGGMLKKDEIFNDNPASEGLSTRDFLGLRAMSHTEFLSNIAAAGYGNCINGGAGQTPQTQIRNQPSWQG | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 257387 | 260064 | + | CmoCh01G000640.1 | Cmo01g00064 | 373547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00064 | 506 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 182 | IPR036236 | - | |
Cmo01g00064 | 506 | Gene3D | Classic Zinc Finger | 64 | 135 | - | - | |
Cmo01g00064 | 506 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 107 | IPR013087 | - | |
Cmo01g00064 | 506 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 475 | - | - | |
Cmo01g00064 | 506 | MobiDBLite | consensus disorder prediction | 21 | 46 | - | - | |
Cmo01g00064 | 506 | Pfam | Zinc finger, C2H2 type | 85 | 107 | IPR013087 | - | |
Cmo01g00064 | 506 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 18 | 475 | - | - | |
Cmo01g00064 | 506 | MobiDBLite | consensus disorder prediction | 21 | 68 | - | - | |
Cmo01g00064 | 506 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
Cmo01g00064 | 506 | Gene3D | Classic Zinc Finger | 139 | 219 | - | - | |
Cmo01g00064 | 506 | Coils | Coil | 2 | 22 | - | - | |
Cmo01g00064 | 506 | SMART | c2h2final6 | 162 | 182 | IPR013087 | - | |
Cmo01g00064 | 506 | SMART | c2h2final6 | 127 | 157 | IPR013087 | - | |
Cmo01g00064 | 506 | SMART | c2h2final6 | 85 | 107 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00064 | Cmo-Chr1:257387 | Cmo14g00196 | Cmo-Chr14:889620 | 2.42E-116 | dispersed | |
Cmo02g00202 | Cmo-Chr2:947623 | Cmo01g00064 | Cmo-Chr1:257387 | 1.13E-108 | dispersed | |
Cmo11g01172 | Cmo-Chr11:6772071 | Cmo01g00064 | Cmo-Chr1:257387 | 5.72E-103 | dispersed | |
Cmo01g00064 | Cmo-Chr1:257387 | Cmo14g01296 | Cmo-Chr14:10837630 | 0 | wgd | |
Cmo01g00064 | Cmo-Chr1:257387 | Cmo17g00694 | Cmo-Chr17:7056431 | 7.72E-125 | wgd | |
Cmo01g00064 | Cmo-Chr1:257387 | Cmo08g00742 | Cmo-Chr8:4706485 | 2.99E-129 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
8995 | PF00096 | zf-C2H2 | 0.0088 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00064 | K25870 | - | csv:101204728 | 610.912 |