Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00070 ATGACAGTTCAGGGAAAGCATAAGTTCTTCCATGGCACGCTCGAAGTTACCGTCTTCCATGCAACTACATACACACCGTCATCACCACTGGATTGTATCTTTTCTGGAGGAAAGCAAAGCTATGTGACCATCAAGATAAACAACATAGAGGTTGCTCGAACAAACCATGAATACGACCGTGTTTGGAACCAAACATTCCGAGTTCTATGTGCGCATCCATTGACATCTACCATCACCATTACAATGAGAACAACTCGTTCTGTATTGGGAAGATTCCAGATCCAAGCCCAACAGATTTTGAAAGAATCAAGTTTCATCAATGGATTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCAGAGCTCAGACTTAGATTCATGCTATGGTTTCAACCGGCAGTATATGAACTAAGTTGGAAAAAGGTGCTGGAAAATGGAGAGTACAAGGGGCTGAGAAATGCAACGTTTCCTCTAAGGTCCAACTGTCATGTGACTCTATATCAAGATGCTCACCATGTCTCTACGTTTCAACCTCCGTTTCACGGTTCGAGCGCGCCAAGAAGGCTATGGGAAGATGTGTATAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGAGACCCTCAAACTCATATACCCTATGCCTTGGGAGTAAAGCTTGGTGAGTTGTTGAAGCAGAAGGCAGAGGAAGGAGTAGCAGTGAGACTAATGATATGGGACGACGAGACATCCCTTCCCATCATCAAGAATGCTGGGATAATGAAAACACATGATGAAGATGCTCGGGCATATTTCTCGAACTCGAAAGTTGTATGTAGGTTGTGCCCCAAATTACATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAGACCATAACAGTAGACGCTCAAACTCACATCAACGCAAGGAACAGGGAGATTATGAGTTTCATTGGGGGTCTAGATCTTTGTGATGGTCGCTATGACACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCCCACTGCTGTGATTTCTACCAAACGAGTATATCAGGAGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCATGCTCGCGTAACAGGTGAAGCTGCTTGGGATATACTAACAAACTTTGAGCAACGATGGACTAAGCAATCAGATGCTTCGTTGCTAGTCCCAACAAGCATCTTACTAAAACTGATGCCCCCACTTGAATCAAACACAAACCCACAAAAGGATTGGAACGTACAAGTTTTTCGATCTATCAACCACTTGTCTGCCAGCCAAGTTTTCAGAAACTTGACGGTTGAACGTACCATCCACGAGGCATATGTCGAAGCTATCAGAAGAGCCGAGAGATTTATTTACATCGAAAACCAATATTTCATAGGAGGGTGTCACTTGTGGGACAAAGATCAACACTGCGGATGCACGAATTTAATACCGATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAAGTTTGCAGTTTATGTAGTGATTCCAATGTGGCCAGAAGGGCCACCAGAGAGTGAATCAGTAGAGGATATGCTACATTGGACCAGGCAGACAATGACAATGATGTATAGATTGATTGGAGAAGCAATCCAAGAAACTGGGGAGAAGGCCCATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAACAGAGAAGAAGAGAGAAAGTGGGACTTTGTTCCCCCTCACAGTCCACAACATGCAACAGAATACTGGAGTGCCCAACACCATAGAAGGTTTATGGTCTATGTCCATTCGAAGGTCATGATAGTGGACGATTTGTACATTCTGATCGGATCCGCAAACGTGAACCAAAGATCCATGGACGGAGAACGAGATACAGAGATAGCGATCGGATGCTACCAACTAGAAAACGACGGAAAAGAATTGCCAAATGGAAGAGACATTTCAACATTCCGCTTGTCGCTTTGGTACGAACATACTCAACGATTCGAAGAGGTGTTCTTAAACCCCGAAAACTTGCAATGCGTAGAAAGGGTTCGTTCAATAGCAGACGAATCATGGAAAATTTACAGTGGAGAAGAAGTTGCAGACATGAAAGGTGTTCATCTCGTAACGTACCCTGTGAAGGTAAAACAGGACGGATCGATTGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACTAAATGCCCCATTAAAGGAAGAAGATCAATGTTCTTGCCGCCCATTTTCACGACCTAA 2286 43.74 MTVQGKHKFFHGTLEVTVFHATTYTPSSPLDCIFSGGKQSYVTIKINNIEVARTNHEYDRVWNQTFRVLCAHPLTSTITITMRTTRSVLGRFQIQAQQILKESSFINGFFPLLMENGKPSPELRLRFMLWFQPAVYELSWKKVLENGEYKGLRNATFPLRSNCHVTLYQDAHHVSTFQPPFHGSSAPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDPQTHIPYALGVKLGELLKQKAEEGVAVRLMIWDDETSLPIIKNAGIMKTHDEDARAYFSNSKVVCRLCPKLHPMSPPIFSHHQKTITVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHARVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPPLESNTNPQKDWNVQVFRSINHLSASQVFRNLTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKAREKFAVYVVIPMWPEGPPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEERKWDFVPPHSPQHATEYWSAQHHRRFMVYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQLENDGKELPNGRDISTFRLSLWYEHTQRFEEVFLNPENLQCVERVRSIADESWKIYSGEEVADMKGVHLVTYPVKVKQDGSIEDLEENGGHFPDTKCPIKGRRSMFLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 288813 291750 - CmoCh01G000700.1 Cmo01g00070 373553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00070 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 129 IPR035892 -
Cmo01g00070 761 SMART pld_4 300 335 IPR001736 GO:0003824
Cmo01g00070 761 SMART pld_4 606 633 IPR001736 GO:0003824
Cmo01g00070 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Cmo01g00070 761 Pfam C2 domain 12 112 IPR000008 -
Cmo01g00070 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Cmo01g00070 761 SUPERFAMILY Phospholipase D/nuclease 425 688 - -
Cmo01g00070 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo01g00070 761 Gene3D Endonuclease Chain A 445 652 - -
Cmo01g00070 761 SUPERFAMILY Phospholipase D/nuclease 150 409 - -
Cmo01g00070 761 Gene3D Endonuclease Chain A 170 431 - -
Cmo01g00070 761 PANTHER PHOSPHOLIPASE D ALPHA 4 7 761 - -
Cmo01g00070 761 Gene3D C2 domain 2 131 IPR035892 -
Cmo01g00070 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824
Cmo01g00070 761 Pfam Phospholipase D Active site motif 300 335 IPR001736 GO:0003824
Cmo01g00070 761 PANTHER PHOSPHOLIPASE D 7 761 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00070 Cmo-Chr1:288813 Cmo05g00384 Cmo-Chr5:1728849 0 dispersed
Cmo01g00070 Cmo-Chr1:288813 Cmo03g00677 Cmo-Chr3:5991150 1.19E-178 transposed
Cmo01g00070 Cmo-Chr1:288813 Cmo05g00331 Cmo-Chr5:1463539 1.26E-178 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00070 K01115 - csv:101206396 1452.57