Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00080 ATGGATGATTTGCTTTGGAATGGCTCATGGAACAACGGAGAAGACGACGGTGGCAAAGAAAGCCTGCTTTTCTCAGACGGCTCGAGTCGTTGTTCGAGTCCTCCCTTACAAGAGCTTCAAACAGTTGCAAGAATCTTGGGGTTGTCGGAGATCGAAACTCCGACGCCGGAGATGAGGGCGGTGGAACTGGCTGTGGATCCCAAGTCATGGCCGGCGGGAGCTAGCTCCGGTGGACTTCTGTTGGAAGAGCTTGAAAATGACAAAGGAATTGGAGTATCTCCATCATCTTCAAACAACTACGAAACCGCGTCTAGTGATCGAGATCAAATCATGTCACGAATGAAGGAAATGATATATCATGCAGCGGTGTTTAGGCCGGTGAACTTAGGGATAGAGACGGTGGAGAAGAAGAGGAGGAGGAACGTCAAGATGTCGAAGGAACCGCAGACGGTGGCAGCGAGAAAACGAAGGGAGAAGATAAGCGAGAAAATTAGGGTTTTGCAGAGGTTGGTTCCTGGTGGGAGCAAAATGGACACTGCCTCCATGCTTGATGAGGCTGCAAGCTACCTCAAGTTCCTTAGGGCACAAATCAAAGCACTAGAAGGCAATGGCTACAAACTTGGCTCAAGTTGCACCTCCTTCAACCCCACTAGTTTTCCTTCAAATGCTTACTTTCCTTTCTAA 684 48.98 MDDLLWNGSWNNGEDDGGKESLLFSDGSSRCSSPPLQELQTVARILGLSEIETPTPEMRAVELAVDPKSWPAGASSGGLLLEELENDKGIGVSPSSSNNYETASSDRDQIMSRMKEMIYHAAVFRPVNLGIETVEKKRRRNVKMSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDTASMLDEAASYLKFLRAQIKALEGNGYKLGSSCTSFNPTSFPSNAYFPF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 369950 370982 + CmoCh01G000800.1 Cmo01g00080 373563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00080 227 Gene3D - 143 212 IPR036638 GO:0046983
Cmo01g00080 227 PANTHER TRANSCRIPTION FACTOR BHLH87 95 217 - -
Cmo01g00080 227 Pfam Helix-loop-helix DNA-binding domain 153 193 IPR011598 GO:0046983
Cmo01g00080 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 208 IPR036638 GO:0046983
Cmo01g00080 227 SMART finulus 150 199 IPR011598 GO:0046983
Cmo01g00080 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Cmo01g00080 227 Coils Coil 183 203 - -
Cmo01g00080 227 CDD bHLH_AtIND_like 145 201 - -
Cmo01g00080 227 MobiDBLite consensus disorder prediction 1 34 - -
Cmo01g00080 227 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 95 217 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00080 Cmo-Chr1:369950 Cmo02g00585 Cmo-Chr2:3473200 1.58E-36 dispersed
Cmo19g00968 Cmo-Chr19:8754880 Cmo01g00080 Cmo-Chr1:369950 4.15E-13 dispersed
Cmo01g00080 Cmo-Chr1:369950 Cmo14g01314 Cmo-Chr14:10989147 1.13E-84 wgd
Cmo01g00080 Cmo-Chr1:369950 Cmo17g00717 Cmo-Chr17:7213266 1.13E-40 wgd
Cmo01g00080 Cmo-Chr1:369950 Cmo08g00718 Cmo-Chr8:4523831 7.09E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8996 PF00010 HLH 3.00E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00080 - - csv:101214746 272.707