Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00091 ATGGGTTGTGTTCTGGGAAAGTGTTGTACTTGCAATCGCTACACGGCGTCTTCTGAAAGCGATACGGCCCAATTCTGTGATGCCTCGCCGTGTGGTTCACGAGGGAAACATATACTAACGGGAAGGTCATTGGAGTGTGTTCGTGTGCCTTCTCACAACTACTATATGGAGTACTCGCTCCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGGAAACCAAGATAGCGTCTGTGTTAGTACGAAAATTCGAGGTAACCCAAATATCCATTTCTTCGGTGTTTTTGATGGGCATGGTCAATACGGATCGGAGTGTTCGAATTTCGTTAAGGAAAGGGTTGTGCAAATACTATGTAAAGATTCAGCGTTGTCGCAAGATCCCGTTAGAGCCTATAATGCGGCTTTTTTTACCACGAATGATGAATTGCATAAGAGCAAGATCGATGATTCCTTGAGTGGCACAACTGCTATTACTGTTCTTGTTGTTGGAAATATGCTTTACGTTGCGAATGTGGGTGATTCGAGGGCTGTGATAGCTGTTAAAGATGGGAATCGAATTATTGCTAAGGACATGTCCAATGATCAAACACCTTTTAGGAAGGATGAATGCGAGAGAGTAAAGCTGGCCGGGGCTACTGTGATGACAATTGATCAAATTGAAGGGCATAAGGATCCGGGTATTCAGATATGGGGTGATGAGGAGAGCCAGGGAAATGATCCCCCTCGGCTGTGGTTGCCTAATAGCTTCTATCCTGGTACTGCATTCACTCGGAGTGTTGGAGATAGTACAGCCGAGAAGATTGGTGTCACTGCTATCCCTGAGATTTCAGTACTTCAGCTCACTCAAAACCATCTTTTCTTCCTTGTTGCAAGCGATGGAGTGTTCGAGTTCCTTACGAGTCAAGCAATTGTCGATATGGCCGCGAGGTACACCGATCCACGAGATGCCTGCGCTGCCATTACTGGAGAGTCATACAAGCTATGGTTGAGGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCATCTCTGATTCAGATGCTGTTGCAACTGCTGGGCTGAACGGGGTCCATTCAAGGCATAGAGTTATCGAGCGGGGAGCCTCCGAGAGATCAGCCTTCGCTGGAAGTTCGGAGGCCTTTCGATCCATCAGAAGTGATTTCTCAGATGCGTCAATCTCCCAGCATCATGTGGGTTTGATGCACAGAAGCACAGCAATTGTAGTTCCATCTCCTTCTCAGCACCGACCATTGGAAGTGGAAGTGGGCTAA 1293 47.02 MGCVLGKCCTCNRYTASSESDTAQFCDASPCGSRGKHILTGRSLECVRVPSHNYYMEYSLLTQRGYYPDSPDKGNQDSVCVSTKIRGNPNIHFFGVFDGHGQYGSECSNFVKERVVQILCKDSALSQDPVRAYNAAFFTTNDELHKSKIDDSLSGTTAITVLVVGNMLYVANVGDSRAVIAVKDGNRIIAKDMSNDQTPFRKDECERVKLAGATVMTIDQIEGHKDPGIQIWGDEESQGNDPPRLWLPNSFYPGTAFTRSVGDSTAEKIGVTAIPEISVLQLTQNHLFFLVASDGVFEFLTSQAIVDMAARYTDPRDACAAITGESYKLWLRHENRTDDITIIIVHIKGISDSDAVATAGLNGVHSRHRVIERGASERSAFAGSSEAFRSIRSDFSDASISQHHVGLMHRSTAIVVPSPSQHRPLEVEVG 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 416133 419375 - CmoCh01G000910.1 Cmo01g00091 373574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00091 430 CDD PP2Cc 65 347 IPR001932 -
Cmo01g00091 430 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Cmo01g00091 430 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 36 428 - -
Cmo01g00091 430 SUPERFAMILY PP2C-like 45 349 IPR036457 -
Cmo01g00091 430 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Cmo01g00091 430 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 36 428 - -
Cmo01g00091 430 Pfam Protein phosphatase 2C 85 320 IPR001932 -
Cmo01g00091 430 SMART PP2C_4 57 345 IPR001932 -
Cmo01g00091 430 Gene3D - 50 349 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00091 Cmo-Chr1:416133 Cmo17g00274 Cmo-Chr17:1648265 0 dispersed
Cmo01g00091 Cmo-Chr1:416133 Cmo14g01709 Cmo-Chr14:13411004 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00091 - - csv:101212684 693.73