Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00092 ATGTCGTGGCAATCTTACATTGATGATCAATTGATGTATGATGTCGATGGCCATCATCTCCAAGCCGCTGCTATAATCGGGAACGACGGTGCTGTTTGGGCTCAGAGCCCCGCTTTCCCCAAGTTCAAGCCAGAAGAGATGTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGTTTGCACCTTGCTGGATCAAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGCTCACTGTAAAGAAAACAAACCAAGCACTCGTTTTTGGGTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTCGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 396 47.22 MSWQSYIDDQLMYDVDGHHLQAAAIIGNDGAVWAQSPAFPKFKPEEMSAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGLTVKKTNQALVFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 420219 421683 + CmoCh01G000920.1 Cmo01g00092 373575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00092 131 CDD PROF 2 131 IPR005455 GO:0003779
Cmo01g00092 131 Pfam Profilin 1 131 IPR005455 GO:0003779
Cmo01g00092 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Cmo01g00092 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cmo01g00092 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cmo01g00092 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cmo01g00092 131 PANTHER PROFILIN-A 1 131 - -
Cmo01g00092 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cmo01g00092 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cmo01g00092 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cmo01g00092 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00092 Cmo08g00707 CCT
Cmo01g00092 Cmo17g00727 CCT
Cmo01g00092 Cmo08g00707 ECH
Cmo01g00092 Cmo17g00727 ECH
Cmo01g00092 Cmo14g01321 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00092 Cmo-Chr1:420219 Cmo12g01309 Cmo-Chr12:11468872 1.20E-67 dispersed
Cmo01g00092 Cmo-Chr1:420219 Cmo14g01321 Cmo-Chr14:11035489 1.40E-88 wgd
Cmo01g00092 Cmo-Chr1:420219 Cmo17g00727 Cmo-Chr17:7272105 3.98E-73 wgd
Cmo01g00092 Cmo-Chr1:420219 Cmo05g01377 Cmo-Chr5:10670019 1.17E-74 wgd
Cmo01g00092 Cmo-Chr1:420219 Cmo08g00707 Cmo-Chr8:4469155 1.77E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00092 K05759 - csv:101218089 248.825