Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00097 ATGTTTTCGTCCATGAATCCTGTGCGAATTCGCACTTTGTTCTTCCTTCTCTACTTCTCCATTCTTCTTCAACATCATTCCCTCTGTTCCTCATCTCCCTCGCCCTTAACTTGTACGGATACAACCCGGTTGTGCACCTCGTTTCTGGCTTTCAAGCCTCAGCCAAATCAGACGCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTCACTGTCGAAGGCAATGGCTGGGACTATGTGTTCATCAGGAAGAATTGCTCCTGTGCCTCTGGATTGAAGAAATACATCACCAATACCACTTTTACCATCAAATCGATTCGGGGTTTTGTGTATGACATGGTCTTGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAACACCACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGCGGCTGTTTTGTGCCTGTTCAAGTGGGCTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGCGATACCATTCAGTCTTTGGCTAGCCGATTTGGGGTCAGTATGGATAGCATTGAGTCGGTGAATGGAATTCAAAATCCCAGCAATGTCACTGTGGGTGCTTTGTATTATATTCCCCTGAATTCGGTTCCTGGTGATCCTTATCCATTGGAGACCCACATTCCTCCTGCTCCTACTCCTGCTCCTTCCTATTCTCTCAACAATGTCTCAGATAATGCTGAGAACTCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTAGGAATTATTCTTGTTCTGATTTTATTAGGCATAGGAGGTTATGCTTGTTGTAGGTGGTCGAAATGCTTTTCTAGATTAAGGAGTAGCCACTCCAAGGATCCTGGTGCCAAGGTTTCACACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGTAGTTCTGCAGATTGGAAACAACCCAGCACGGAGTCGAGCGATAACCAGAGTGCAATTCCAAAAGCTATTGAGAGCAATGTATTCAATGTAGACAAACCTGTGGTTTTCTCCTGCGAAGAAATATTTTCCACGACCGATGGTTTCTCCGAGTCGAGTCTGCTTGGCCATGGAACTTATGGTTCAGTGTATCATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAGAGAATGACTGCAACAAAAACTAAAGAGTTTCTGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCAAACCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGCGGAGCTCTTTCTTATTTATGAATATGCTCAAAAAGGTCCACTCAAAAGTCATTTACATGATCCTCTGAACAAGGGTCATACATCACTCTCTTGGATTATGAGACTCCAAATTTCTTTGGACGTTGCGAGAGGTCTTGAATACATTCACGAGCACACTAAACCTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCATTTAGGGCGAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACTAATGAGGGTGAAGCTACTGTAACCAAAGTTGTGGGTACATATGGCTATCTGGCTCCTGAATATTTGAGTAACGGACTTGCTACAACTAAAAGCGACGTGTACGCTTACGGTGTTGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATCATACGAACTGAGGGCACGACTTTGAAAAATCCTGAAAGACGTTCGTTGGCATCCATTATGCTAGGTGTTGTTCGTAACACACCTGATCCTACGAATATGGGAAGTCTAAAAGATGAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTCAAGCCGATGAAACTTCAACATTCAAACACGTTTCTCTCAGTGTTGGATTGTGATGCTGATTTGTGTATTTATGATGATGTGTTTGGTACACTTGTGGCGATGTTGGGAAAGCAGTGTGTGGATGAGGATCCCATGTTACGACCGGACATGAAGGAAGTGGTGATATCGTTGTCACAGATCCTACTGTCTTCGATAGAGTGGGAAGCGACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAA 2103 43.79 MFSSMNPVRIRTLFFLLYFSILLQHHSLCSSSPSPLTCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGWDYVFIRKNCSCASGLKKYITNTTFTIKSIRGFVYDMVLEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIQSLASRFGVSMDSIESVNGIQNPSNVTVGALYYIPLNSVPGDPYPLETHIPPAPTPAPSYSLNNVSDNAENSKRHPPYIWIVGSLGIILVLILLGIGGYACCRWSKCFSRLRSSHSKDPGAKVSHKFHILGKSSFCCASGRYICCSSADWKQPSTESSDNQSAIPKAIESNVFNVDKPVVFSCEEIFSTTDGFSESSLLGHGTYGSVYHGILRDQEVAIKRMTATKTKEFLAEMKVLCKVHHANLVELIGYAASEAELFLIYEYAQKGPLKSHLHDPLNKGHTSLSWIMRLQISLDVARGLEYIHEHTKPHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTLKNPERRSLASIMLGVVRNTPDPTNMGSLKDEVDPSMMDLYPHDCLFKPMKLQHSNTFLSVLDCDADLCIYDDVFGTLVAMLGKQCVDEDPMLRPDMKEVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 440326 444205 + CmoCh01G000970.1 Cmo01g00097 373580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00097 700 Pfam LysM domain 159 196 IPR018392 -
Cmo01g00097 700 Pfam Protein kinase domain 361 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00097 700 SUPERFAMILY LysM domain 157 202 IPR036779 -
Cmo01g00097 700 SUPERFAMILY Protein kinase-like (PK-like) 341 672 IPR011009 -
Cmo01g00097 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Cmo01g00097 700 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 635 700 IPR044812 GO:0019199|GO:0045087
Cmo01g00097 700 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 37 618 IPR044812 GO:0019199|GO:0045087
Cmo01g00097 700 Gene3D Transferase(Phosphotransferase) domain 1 433 686 - -
Cmo01g00097 700 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Cmo01g00097 700 SMART serkin_6 360 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00097 700 ProSiteProfiles Protein kinase domain profile. 360 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00097 700 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Cmo01g00097 700 Gene3D LysM domain 154 207 IPR036779 -
Cmo01g00097 700 SMART LysM_2 158 202 IPR018392 -
Cmo01g00097 700 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
Cmo01g00097 700 CDD LysM 158 201 IPR018392 -
Cmo01g00097 700 PANTHER BNAA06G02020D PROTEIN 635 700 - -
Cmo01g00097 700 PANTHER BNAA06G02020D PROTEIN 37 618 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00097 Cmo14g01324 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00097 Cmo-Chr1:440326 Cmo04g01841 Cmo-Chr4:9256898 1.16E-115 dispersed
Cmo01g00097 Cmo-Chr1:440326 Cmo14g01324 Cmo-Chr14:11058469 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74011 PF00069 Pkinase 9.90E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00097 - - csv:101213624 1155.2